Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2787 109 4e-19 seq2003 95.1 1e-14 seq2913 86.0 5e-12 >seq2787 Length=631671 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 599227 CAAGAAGTGCAAGTCACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 599168 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 599167 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 599120 >seq2003 Length=1208679 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| |||||||| ||| Sbjct 411043 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTTGATGGTGAATTGT 410984 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 |||| || | ||||| || || || || ||||||||||| || || || || || || | Sbjct 410983 CATGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 410924 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||| || ||||||||||| || || || Sbjct 410923 GCTATTCATTGCTTACTTATATGATTGCCCATGTCAC 410887 >seq2913 Length=504153 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| |||||||||||||| ||||||| |||||||| || ||||| | Sbjct 495106 AAAATCCTTTTGATTTCATGGAAAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 495165 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| |||||||| || | | || ||| ||||| |||||| || | Sbjct 495166 AGCGGGTTTCGGAATATCAACGTTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 495225 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 495226 CTCTGGATGCAGATTT 495241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440344208160