Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq37 232 2e-55 seq1558 170 6e-37 seq2507 105 2e-17 seq2936 84.2 7e-11 >seq37 Length=2074313 Score = 232 bits (256), Expect = 2e-55 Identities = 944/1468 (64%), Gaps = 31/1468 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || ||||| | || || || || ||||| || | ||| | || ||| Sbjct 954520 GCAATCGGCATCGACCTGGGCACCACGTACTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 954579 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| ||||| ||||| ||| | || || || || || || || || Sbjct 954580 GTGGAGATCATTGCCAATGACCAAGGGAACCGCACCACACCCAGCTATGTGGCCTTCACT 954639 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||||| | || |||||| | || || || || | ||| || || | || Sbjct 954640 GATACAGAGCGCCTCATCGGTGATGCAGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 954699 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || | |||||||||||||| || || || | | | | |||| | || || Sbjct 954700 ACCATCTTTGATGCTAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCC 954759 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 ||| | || || | || || ||| || || ||| | | || || | | | Sbjct 954760 GATATGAAGCACTGGCCCTTCCGTGTGGTG---AATGACAGCGGCAAGCCCAAGGTACAA 954816 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTT 349557 || || || || || || | || | ||| | ||| || || || || ||||| | Sbjct 954817 GTGGAGTACAAGGGGGAG-ATGAAGACTTTCTTCCCAGAGGAGATCAGCTCTATGGTCCT 954875 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 | || |||||||| |||||||| || ||| | || | ||| |||| || || Sbjct 954876 AACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCCGTCAT 954935 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||| || || || || || || || ||||||| || || ||||||||||||| ||| Sbjct 954936 TACAGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 954995 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 | || | ||||| | | || || ||||| ||||| || || || || || ||||| Sbjct 954996 CACTGGCCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGG 955055 Query 349738 GCTTGATAAAATGAGT----GACC--AAGaaaaaaaTATTCTTATTTTTGATTTAGGTGG 349791 | || || | | || || | || || ||| | || || ||||| || || || Sbjct 955056 CTTGGACAAGAAGGGTACTCGAGCTGGTGAGAAGAATGTGCTCATCTTTGACTTGGGAGG 955115 Query 349792 TGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAAC 349851 |||||||| ||||| || | || || |||| || ||||| ||||| || || | || Sbjct 955116 GGGTACTTTCGATGTGTCCATCCTTACCATTGAGGATGGAATCTTTGAGGTGAAGTCCAC 955175 Query 349852 TGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGT 349911 |||||||| || ||||| ||||| || || ||||| || ||| | || |||||||| Sbjct 955176 AGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGTATGGTGAACCATTTTGT 955235 Query 349912 TAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTC 349970 ||||||| |||||| |||| || ||| |||| | || |||| || | | Sbjct 955236 GGAAGAATTCAAGCGT-AAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCGGTGAGGC 955294 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTA 350030 | || | || || ||||| | || ||||| || | ||| | || ||| | | Sbjct 955295 GGCTGCGTACAGCTTGTGAGAGGGCAAAGCGCACCCTCAGCTCTTCCACACAAGCTAGCA 955354 Query 350031 TTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGT 350090 |||| ||||| || || || || | || |||| | || ||||| ||||| || | Sbjct 955355 TTGAGATTGACTCCCTCTTCGAGGGTATTGACTTCTACACCTCCATTACCCGTGCCCGCT 955414 Query 350091 TTGAAGAATT--ATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148 |||| || | ||| | ||||| || | | || |||| || ||||| || | | Sbjct 955415 TTGAGGAGCTCAATGCA--GATCTCTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCTCT 955472 Query 350149 AAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208 ||||| || | ||| ||||| | || | || | || ||||| ||||| Sbjct 955473 GCGTGATGCCAAGCTAGACAAGGGCCAGATCCAAGAGATTGTGCTGGTGGGTGGCTCTAC 955532 Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTA 350267 |||||||| || | ||| || | ||| || || || ||||||||||| | | | | Sbjct 955533 CCGTATTCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAA 955592 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTAT 350327 || | || || || ||||| |||||||| || ||||||||||| || ||| |||| | Sbjct 955593 GAGC-ATCAACCCCGATGAGGCTGTTGCTTACGGTGCTGCTGTGCAAGCAGCTATCCTCA 955651 Query 350328 CTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTTT 350384 ||| | ||| ||| | | || | ||||| | || | ||||| || || || | Sbjct 955652 TGGGAGACAAG---TCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGT 955708 Query 350385 CGCTTGG--ATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTAC 350442 | ||||| ||| || || |||||| ||| ||||| | ||| || | || | || Sbjct 955709 C-CTTGGGCATT-GAGACAGCTGGTGGAGTGATGACAGCTCTCATCAAGCGCAACACCAC 955766 Query 350443 TGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAG-CCAGCGGTAA 350501 | || || ||| | | || || || | || | | |||| || ||| |||| || Sbjct 955767 CATTCCCACCAAACAAACTCAGACCTTCACCACCTATTCAGACAACCAGAGCAGC-GTCC 955825 Query 350502 CAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAAT 350561 | || |||| || ||||| | ||| || || || || || || || | | Sbjct 955826 TTGTCCAGGTATACGAGGGTGAGAGGGCTATGACGAAGGACAACAACTTGCTGGGCAAGT 955885 Query 350562 TTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCG 350621 || ||||| | || || ||| ||| | ||||| || ||||| || ||| |||| | Sbjct 955886 TTGACCTAACGGGCATCCCCCCAGCGCCCCGTGGAGTCCCCCAGATCGAGGTCACTTTTG 955945 Query 350622 ATATTGATTCAAATGGTATTTTAAATGT 350649 | || ||| | |||||||| | ||||| Sbjct 955946 ACATCGATGCCAATGGTATCCTGAATGT 955973 >seq1558 Length=3585338 Score = 170 bits (188), Expect = 6e-37 Identities = 369/548 (67%), Gaps = 6/548 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| |||| || ||||| | || ||||| ||||||||||| || | || || Sbjct 3293802 GAAAGGAATGTTCTCATCTTTGACCTCGGAGGTGGCACTTTTGATGTGTCCATTCTGACT 3293743 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| || || || || || ||| | ||||| ||||| || || | ||||||||| Sbjct 3293742 ATTGAAGATGGTATCTTCGAGGTGAAATCCACTGCAGGTGACACCCACTTGGGTGGAGAA 3293683 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATT 349939 || ||||| || || | || || || || || || ||||| || || | Sbjct 3293682 GACTTTGACAACCGCATGGTGAACCACTTCATTGCCGAGTTCAAGCGCAAACACAAGAAG 3293623 Query 349940 GATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAG 349999 || || | || || | ||| | |||||||| | || ||||| || ||||| ||| Sbjct 3293622 GACATCAGTGAAAACAAGCGCGCAGTTCGTCGCCTCCGCACCGCGTGNGAGCGTGCCAAG 3293563 Query 350000 CGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAA 350059 ||| | | || |||| || || || |||||||||||| ||||| ||| |||| Sbjct 3293562 CGTACTCTGTCTTCTAGCACGCAGGCCAGTATTGAAATTGACTCTCTCTATGAGGGCATT 3293503 Query 350060 GATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTA 350117 || |||| |||| || || | ||||| |||||||| || ||| || || || Sbjct 3293502 GACTTCTACACATCCATCACCAGAGCTCGCTTTGAAGA--GCTGAATGCTGACCTGTTCC 3293445 Query 350118 GAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGA 350177 | | || ||||||| ||||| || | | ||||| || | ||| |||| Sbjct 3293444 GCGGCACCCTGGATCCAGTGGAGAAGGCTCTGCGGGATGCCAAGCTTGACAAGTCCCAGA 3293385 Query 350178 TTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTAT 350237 | |||| | || | |||||||||||||| ||||| ||||| |||| | | || Sbjct 3293384 TCCATGATATTGTGCTGGTTGGTGGTTCTACTCGTATCCCAAAGATTCAGAAACTGCTGC 3293325 Query 350238 CTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 || || || ||||||||||| | | ||| | || ||||| ||||| ||||| || Sbjct 3293324 AGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAGGCTGTGGCT 3293266 Query 350297 TATGGTGC 350304 |||||||| Sbjct 3293265 TATGGTGC 3293258 Score = 107 bits (118), Expect = 6e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | ||||| ||||||||||| || || | |||||| || |||||||||| Sbjct 3294058 ATGCTGTAGTGACTGTCCCAGCCTATTTCAACGACTCTCAGCGTCAGGCTACAAAAGATG 3293999 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | |||||| ||| | ||||| || |||| || ||||| || || ||||| |||| Sbjct 3293998 CTGGAACCATTGCAGGGCTCAATGTCCTGCGAATTATCAATGAGCCAACAGCTGCTGCAA 3293939 Query 349728 TTGCATATGGGCTTGATAA 349746 | || ||||| || || || Sbjct 3293938 TAGCCTATGGTCTGGACAA 3293920 >seq2507 Length=1053364 Score = 105 bits (116), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | || | |||||||| || || || ||||| ||| | || || || | Sbjct 926677 ATTGATGAGATTGTGCTTGTTGGTGGCTCCACTCGCATTCCCAAAATACAGCAACTAGTT 926736 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| |||||||||||| | |||||||||||||| |||||||| Sbjct 926737 AAAGAGTTCTTCAATGGGAAAGAACCTTCTCGTGGCATTAATCCAGATGAGGCTGTTGCT 926796 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||| ||||| Sbjct 926797 TATGGTGCNGCTGTCCAGGC 926816 Score = 91.5 bits (100), Expect = 4e-13 Identities = 124/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| | || || ||| || ||| || ||||| || Sbjct 925948 ACAGCTGCTGCCATTGCTTATGGATTGGACAA---GAGAGAGGGAGANAAGAATATCCTC 926004 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| || |||||||| ||||||||||| || || || || | || | ||| | Sbjct 926005 GTGTTTGACTTGGGTGGTGGAACTTTTGATGTCTCCCTCCTCACCATCGATAATGGAGTC 926064 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 |||||||| || ||| |||||| || || || ||||| ||||| ||||| Sbjct 926065 TTTGAAGTCGTGGCTACTAATGGTGACACTCACCTGGGTGGGGAAGACTTTGA 926117 >seq2936 Length=485473 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 ||||||| || || || ||||| | || || |||||||| || || ||||||||||||| Sbjct 421924 CTTTTTGGATGTTGTAGTCAGACAGCGTGCGTCCATCTTCGAGCTGCTTTCCAGCAAAGA 421865 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||| ||||||||||| ||| Sbjct 421864 TCAGTCGCTGCTGGTCAGGAGGAATGCCT 421836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515191653315296