Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq692 215 7e-51 seq1747 120 4e-22 >seq692 Length=1742483 Score = 215 bits (238), Expect = 7e-51 Identities = 617/935 (66%), Gaps = 28/935 (3%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||||| |||||||| ||||| |||||||||||||| || || ||||| |||| Sbjct 1247375 CCGCTGAGCCAGGAAGAGGAAGAGTTCCCCATCGCCTACTCCATGGTCATCCATAACAAA 1247434 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||||||||| |||||| || || |||| ||||| ||||| ||||||||||| Sbjct 1247435 ATTGAGATGTTCGAGCGGCTCCTGCGGTCCCTCTATGCCCCCCAGAATGTCTACTGCGTC 1247494 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGG--GGCGTCTCGGCCATCGCCAGGT 13848 ||| | || ||||||| | || ||| | || | ||| |||||||| | Sbjct 1247495 CACATTGATAACAAGTCCCCAGCCGCCTTC--CAGGAAGCCGTGCGGGCCATCGTAGCCT 1247552 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||||| ||||| |||| || ||| | ||||||| || | ||||||| | Sbjct 1247553 GCTTCCCCAACGTCTTTGTGGCGAGCCACCTGGAAAACGTGGTCTATGCCTCCTGGTCCC 1247612 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTG--GACGCCTCCCCCGTCAAGTGGAG 13966 | ||||||||||||||| ||||||| ||||||| | | | || | ||| Sbjct 1247613 GGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAAT--CCNATTCCCTGGCA 1247670 Query 13967 GTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCG 14026 ||| | |||||| ||||| | || ||||| ||||||| ||| ||||| || || Sbjct 1247671 CTACGTCCTCAACACCTGCGGCACTGATTTCCCCATCAAGACGAACGCCGAGATTGTCCG 1247730 Query 14027 GGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGCCCAACCAC 14084 || ||||||| ||| || |||| | ||||| | || | | | || | | Sbjct 1247731 TGCCCTGAAGGTGCTGCAGGGGCGGAACAGCATGGAGTCGGAGAAGCCGTCGGCA--CTC 1247788 Query 14085 AAGCTGCACCGC-ATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACAC 14143 |||| ||| ||| || | | ||| |||| |||| | || | || || Sbjct 1247789 AAGCAGCAGCGCTGGCAATACCA-CCACAAGGTG--CAGCAG----GTCATCTTCCGGAC 1247841 Query 14144 CGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTT 14203 | || || || ||||| || | || |||||| || | || ||||| ||| | Sbjct 1247842 AGCCACCAAGAAACTGCCGCCTCCCCACAACTACCCCATGTTCACTGGTAACGCATACGT 1247901 Query 14204 TGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC---T 14260 | | ||||||| | |||||| | | || || ||||| || | || | || | Sbjct 1247902 CGTGATCACCCGTGCCTTCGTGCAGCACATCTTCGAGGAC---CCCGCAGCGCAGCAGTT 1247958 Query 14261 CATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320 | | | ||| | ||||||| |||||||| ||||||||| | |||||||| | | | Sbjct 1247959 CCTCGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTCTGGGCCACGCTCAACCG 1248018 Query 14321 AATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTG 14380 || || |||||| | || ||| ||| ||||| | | |||||||||| Sbjct 1248019 TGTGCCTGGTGTGCCCGGCGCCATGCCCCCGAACGACAAGTTCCAGCTCTCGGACATGAA 1248078 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 ||| | | | | ||||||||| | ||| |||||||| | || || || || | Sbjct 1248079 CGCCCTGCCCCGTCTGGTCAAGTGGGAGTACCTGGAGGGGGACACCAGCAAGGGCGCGCC 1248138 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500 ||||| || ||| |||| || | |||| |||| |||| ||| |||||||| Sbjct 1248139 CTACCCACCCTGCACCGGCCAGCATCAGCGCGCCGTCTGTATCTACGGCGTGGGCGACGT 1248198 Query 14501 GAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACG 14559 | ||| || ||| | | ||||| || ||||||||||||||| | | ||||| Sbjct 1248199 GCCCTGGATGCTCCAGCAGCAC-CACCTCTTGGCCAACAAGTTCGACCCCTTGGTGGACG 1248257 Query 14560 AGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | ||| | | |||||||| ||| || ||||| Sbjct 1248258 ACGCCGCTATCCAATGTCTGGAGGAGCACTTGCGC 1248292 >seq1747 Length=1273762 Score = 120 bits (132), Expect = 4e-22 Identities = 256/377 (68%), Gaps = 12/377 (3%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATG 13739 ||||||| || || ||||| |||||| || || || |||||| | |||| Sbjct 638756 GAAGAGGCCGCCTTCCCCATTGCCTACGTTAT---GACCCTGCACAAGGAGTTTGAGACC 638812 Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 || ||||| ||| | ||||| | ||| || |||||| |||||||| |||||||||| Sbjct 638813 TTTGAGCGGCTCTTCAGGGCAGTGTACATGCCCCAGAACGTCTACTGCATCCACGTGGAT 638872 Query 13800 TCCAAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG-TGCTTCCCT 13856 ||||| | |||| || | |||| |||| |||| || || |||||||| Sbjct 638873 GCCAAGGCACCGGCC-CGTTTCCATC--GGGCAGTGCGGCGCCTGCTGGGCTGCTTCCCC 638929 Query 13857 AACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAG 13916 |||| ||| ||| |||| | | ||||| || ||| | ||| ||| | Sbjct 638930 AACGCCTTCCTCGCCTCCCGGANGGAGCGGGTGGTCTATGGCGGCATCTCCCGCCTGCGG 638989 Query 13917 GCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTC 13976 || |||||| ||||||| |||||| ||||| |||| ||| | ||||||||| Sbjct 638990 GCTGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTACCTGCTC 639049 Query 13977 AACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 ||| ||||| ||||||||| | |||||||||| ||||| || | | ||||||| Sbjct 639050 AACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGAGAGATAGTCCAGCTGCTGAAG 639109 Query 14037 GCCCTGGGCGGCAAGAA 14053 | ||| | |||||||| Sbjct 639110 GGCCTCAGGGGCAAGAA 639126 Score = 113 bits (124), Expect = 6e-20 Identities = 253/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATG 13739 ||||||| || || ||||| |||||| || || || |||||| | |||| Sbjct 650241 GAAGAGGCCGCCTTCCCCATTGCCTACGTTAT---GACCCTGCACAAGGAGTTTGAGACC 650297 Query 13740 TTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 || ||||| ||| | ||||| | ||| || ||||| |||||||| |||||||||| Sbjct 650298 TTTGAGCGGCTCTTCAGGGCAGTGTACATGCCCCAGAANGTCTACTGCATCCACGTGGAT 650357 Query 13800 TCCAAGTC-CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG-TGCTTCCCTA 13857 ||||| | | | || | |||| |||| |||| || || |||||||| | Sbjct 650358 GCCAAGGCACNGGCCCGTTTCCATC--GGGCAGTGCGGCGCCTGCTGGGCTGCTTCCCCA 650415 Query 13858 ACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGG 13917 ||| ||| ||| |||| | | ||||| || ||| | ||| ||| || Sbjct 650416 ACGCCTTCCTCGCCTCCCGGACGGAGCGGGTGGTCTATGGCGGCATCTCCCGCCTGCGGG 650475 Query 13918 CCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCA 13977 | |||||| ||||||| |||||| ||||| |||| ||| | |||||||||| Sbjct 650476 CTGACCTCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTACCTGCTCA 650535 Query 13978 ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGG 14037 || ||||| ||||||||| | |||||||||| ||||| || | | |||||||| Sbjct 650536 ACACCTGCGGCCAGGACTTCCCCTTGAAGACCAACCGAGAGATAGTCCAGCTGCTGAAGG 650595 Query 14038 CCCTGGGCGGCAAGAA 14053 ||| | |||||||| Sbjct 650596 GCCTCAGGGGCAAGAA 650611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658712586936320