Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2003 105 6e-18 >seq2003 Length=1208679 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 |||||| || ||||| || || |||| | || || ||||| ||||| ||||| |||| Sbjct 410889 GACATGGGCAATCATATAAGTAAGCAATGAATAGCTGGCAATATTGAAAGGCACTCCTAG 410948 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 ||||| ||||| || | |||||||||||||| |||| || |||| || ||||| Sbjct 410949 TCCCATATCTCCAGACCTCTGATAGAGCTGGCATGACAATTCACCATCAAGAACATAGAA 411008 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 ||||| |||| ||||| || || | |||||||||| Sbjct 411009 CTGGCAAAGGGCATGGCATGGAGGCAAAGCCATCAGAG 411046 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 |||||||||| | || || ||||| |||| ||||| ||||| || |||| || Sbjct 411046 CTCTGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTTGATGGTGAAT 410987 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 |||| |||||||||||||| | || ||||| ||||| |||| ||||| ||||| |||| Sbjct 410986 TGTCATGCCAGCTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTG 410927 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 | || || | |||| || || ||||| || |||||| Sbjct 410926 CCAGCTATTCATTGCTTACTTATATGATTGCCCATGTC 410889 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || || ||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 414431 TATTCTGCTCCNAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 414490 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| |||| ||||| || || || ||||| ||||| ||||| |||||| Sbjct 414491 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGNGACCCATGAGCATCCCAAATCTTC 414550 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 414551 ACACCTTTTGCAGAGAGCTCTTTGG 414575 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||||| ||||| || || || | Sbjct 414575 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTCATGGGTCNCGTGAGTTCC 414516 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| ||| ||| | | |||||||| || ||||| || || || || |||| Sbjct 414515 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCC 414456 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| ||||| || || || || Sbjct 414455 AGTGGAGGCACTTNGGAGCAGAATA 414431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448244290199040