Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20aestiva_20[genbank_20GCA_5F001420675.1_202015-10-30] 3,232 sequences; 1,129,535,839 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq337 145 1e-29 seq425 105 1e-17 >seq337 Length=1925606 Score = 145 bits (160), Expect = 1e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| ||||| || || |||||||| Sbjct 1631813 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 1631754 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || | ||||||||| || ||||| || || | ||||||||| | || || Sbjct 1631753 ATGTCACAGACTCGGTTGTGTTCNCTCAGCCATATTGTAGAGTACATCATCAAGCCTGGG 1631694 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || | | ||||| Sbjct 1631693 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 1631634 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 1631633 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 1631574 Query 9484 TG 9485 || Sbjct 1631573 TG 1631572 Score = 143 bits (158), Expect = 4e-29 Identities = 220/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | ||| Sbjct 1633963 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 1633904 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || || || | ||| || |||||||| |||||||||||| | |||| Sbjct 1633903 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 1633844 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || ||||||| ||||| || ||||| || || || | ||| | || Sbjct 1633843 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAGAATGGNGCTCCAATCTCCACCATTG 1633784 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | |||||||||||||| || || |||| ||| || | || || | |||||| |||| Sbjct 1633783 TTTCACCGAAGATGGCACCTGGTCGTGGCTGTTCTACAAGGAGGCCTGGGTACAGNTCCA 1633724 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-- 8586 ||| || | ||||| ||||| | | ||| || || || || ||||| ||||| Sbjct 1633723 TAGCATCAATNTCTCCATAAAGCTCTTCCAATTCAGCTGCCATTTCTTTTTCCCCTGTAA 1633664 Query 8587 TTTATTAATAAAAA 8600 || |||| |||||| Sbjct 1633663 TTGATTAGTAAAAA 1633650 >seq425 Length=1857977 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 ||||||| ||||| ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 1035441 CTCCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 1035382 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| || ||||| || | ||| | ||||| || || ||||| ||||||| Sbjct 1035381 CCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAGATTCCGTTGGGTT 1035322 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGG 8552 |||| || || | || || || | || | ||||| || || | |||||| || || Sbjct 1035321 GGGGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCAGCGCGTCAATGTCTCCATAGAGCT 1035262 Query 8553 CCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | ||||| || || |||| | ||||||| Sbjct 1035261 CTTGCAGTTCTGCCGCTTTCTCTTCCTCTCCTG 1035229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716847838177280