Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq116889 138 1e-27 seq144538 123 3e-23 seq45594 116 4e-21 seq26289 116 4e-21 seq106746 96.9 4e-15 seq56122 87.8 2e-12 >seq116889 Length=707 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 406 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 465 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| |||||| | |||||||| ||||| || | ||| Sbjct 466 AGTGACACCATTGAGAATGTGAAGGCAAAAATCCAGGACAAAGAAGGCATTCCTCCTGAC 525 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| ||| ||||| |||||||| |||| |||||||| ||||| Sbjct 526 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTAT 585 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| || ||||| ||| |||| | || || ||| Sbjct 586 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGAGGTGGC 636 >seq144538 Length=901 Score = 123 bits (136), Expect = 3e-23 Identities = 147/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| || || ||||| ||||| ||||||||| | || || || Sbjct 200 GAAACATGCAGATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTGGAGGTGGAGC 141 Query 40745 CCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 ||| ||||| | | | |||| | |||| || || | ||||| || ||||| || | Sbjct 140 CCAGCGACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCACCC 82 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| | || |||| || ||||| |||||||| || | |||||||| ||| Sbjct 81 GACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGAC 22 Query 40864 TACAACATCCAGAAGGA 40880 ||||||||||||||||| Sbjct 21 TACAACATCCAGAAGGA 5 >seq45594 Length=40842 Score = 116 bits (128), Expect = 4e-21 Identities = 123/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 40757 TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGAC 40816 || ||||| | |||| || || | ||||| || ||||| || | |||||||| | | Sbjct 40819 TGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGC 40761 Query 40817 TCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGA 40876 | |||| ||| ||||| |||||||| || | |||||||| |||||||||||||||| Sbjct 40760 TGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGA 40701 Query 40877 AGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||| |||| || ||||| ||| ||||| ||||||| ||| Sbjct 40700 AGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 40660 >seq26289 Length=38760 Score = 116 bits (128), Expect = 4e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| || ||||||||||| ||||| || |||||||| || |||| || Sbjct 1420 GAGCCGCTGCTGCGGGACAACCCCCGCCGCTTCGTCATATTCCCCATCCAGTACCACGAT 1361 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||| ||||| || |||||||| | ||||||||| Sbjct 1360 ATTTGGCAGATGTACAAGAAGGCTGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 1307 >seq106746 Length=418 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| |||||||||| || ||||||| |||||| || |||||||| |||| || Sbjct 340 GGGATCCCCCCGGACCAGCAGCGCCTCATCTTCGCGGGGAAGCAGCTGGAGGACGGCCGG 281 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| |||||||||||||||||| Sbjct 280 ACCCTCGCCGACTACAACATCCAGAA 255 >seq56122 Length=31370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 23503 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 23562 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 23563 GGCTGAAGAAGAGGGGCCTGATGCCAGGGCTGACTTTCTCCAATGAACTTATTAGCAGAG 23622 Query 117162 ACGAGG 117167 | |||| Sbjct 23623 ATGAGG 23628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514040803526240