Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq153472 167 3e-36 >seq153472 Length=339 Score = 167 bits (184), Expect = 3e-36 Identities = 155/193 (80%), Gaps = 9/193 (5%) Strand=Plus/Plus Query 139505 GTGTGGGAGCGACGCCGTCCGCGCGCCCCACGGCGCAggggggcgcgggggttgccccgg 139564 |||| |||||| ||||||||||| ||||||| |||| |||||| || || ||| Sbjct 88 GTGTCGGAGCGGCGCCGTCCGCGAATCCCACGGTTGAGGGAAGCGCGGCGGCTGTGCCGA 147 Query 139565 gggcgccgctcccgtgttgctctgctgggg------gcgcggggccgcgcgc-CGCATCT 139617 || ||||||||| || |||||||||||||| ||| |||| || || | | || || Sbjct 148 GGACGCCGCTCC-GTTTTGCTCTGCTGGGGCCCCCGGCGGGGGGACGAGCCCTCTCA-CT 205 Query 139618 CCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGCGGGTGCCGG 139677 |||| |||||||||||||||||||| ||||||||||||||||||| ||||| | |||| Sbjct 206 CCCGACCGCCGCCGAGGCTGACAGAGACGAACTCTTCGCGGCGGCAGTGGCGCGAACCGG 265 Query 139678 CCGACCGCGGCCT 139690 ||||||||||||| Sbjct 266 CCGACCGCGGCCT 278 Score = 167 bits (184), Expect = 3e-36 Identities = 155/193 (80%), Gaps = 9/193 (5%) Strand=Plus/Minus Query 1930 AGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCTC 1989 ||||||||||||||||| | ||||| ||||||||||||||||||| ||||||||||||| Sbjct 278 AGGCCGCGGTCGGCCGGTTCGCGCCACTGCCGCCGCGAAGAGTTCGTCTCTGTCAGCCTC 219 Query 1990 GGCGGCGCCCGGGAGATGCG-gcgcgcggccccgcgc------ccccagcagagcaacac 2042 ||||||| |||||| || | | || || |||| ||| |||||||||||||| || Sbjct 218 GGCGGCGGTCGGGAG-TGAGAGGGCTCGTCCCCCCGCCGGGGGCCCCAGCAGAGCAAAAC 160 Query 2043 gggagcggcgcccccggggcaacccccgcgccccccTGCGCCGTGGGGCGCGCGGACGGC 2102 ||||||||| || ||| || || |||||| |||| ||||||| |||||||||| Sbjct 159 -GGAGCGGCGTCCTCGGCACAGCCGCCGCGCTTCCCTCAACCGTGGGATTCGCGGACGGC 101 Query 2103 GTCGCTCCCACAC 2115 | |||||| |||| Sbjct 100 GCCGCTCCGACAC 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567767240067360