Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq56122 111 1e-19 >seq56122 Length=31370 Score = 111 bits (122), Expect = 1e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 ||||||| ||| |||| || ||||| || || | | || |||||| | | || Sbjct 28177 AAAAATCTGCATCCAGAGTGAAGACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 28118 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||||||| ||| | ||| ||||||||||||||||||||||| | ||||||||||||| Sbjct 28117 GATATTCTGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTTTCCA 28058 Query 16008 TAAAATCAAAAGGATTTTTTG 16028 | |||||||||||||||| || Sbjct 28057 TGAAATCAAAAGGATTTTCTG 28037 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || |||||||| || || | || || Sbjct 23626 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCTTC 23567 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | |||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| ||| Sbjct 23566 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 23507 Query 16379 ACCAATCGCTCACC 16392 |||| || |||||| Sbjct 23506 ACCACTCTCTCACC 23493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461454154116400