Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq88221 114 1e-20 seq116889 104 2e-17 seq144538 98.7 9e-16 seq45594 86.0 6e-12 >seq88221 Length=1045 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| ||||| || ||||| || || || ||| Sbjct 708 ACCTCCTCTTTGCTGGTATACTCCACGATTTCTGTACACAGGTTGCTGCATTTGATGGTG 767 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || | ||||| || || |||||||||||||| || ||| Sbjct 768 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTG 827 Query 23168 CCCGTCTCGACCTGCGACTCGATGAT 23193 || ||||| ||| ||||||||||| Sbjct 828 CCGGTCTCAGTCTGTGACTCGATGAT 853 >seq116889 Length=707 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || |||||| | || ||||| || Sbjct 406 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 465 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | || || | ||| |||||| |||||| | || || ||| Sbjct 466 AGTGACACCATTGAGAATGTGAAGGCAAAAATCCAGGACAAAGAAGGCATTCCTCCTGAC 525 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || ||||||||||| ||| |||||||| || || || ||| Sbjct 526 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTAT 585 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || || ||||| || || Sbjct 586 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCT 620 >seq144538 Length=901 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||| || ||||| ||||| || || ||||| || |||||| | || || || || Sbjct 199 AAACATGCAGATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTGGAGGTGGAGCC 140 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | || | || || || || ||||||||||||| | || ||||| Sbjct 139 CAGCGACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCACCCGA 80 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||| | || || || |||||||| ||| ||||||| Sbjct 79 CCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 41 >seq45594 Length=40842 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | || || ||||||||| | || || ||||||||||| ||| |||| Sbjct 40795 GGACAAGGAAGGCATTCCTCCTGACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGA 40736 Query 31345 AGACTCTATG-ACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTAC 31403 ||| | | | || || || || ||||| || || ||||| || || ||||| || | Sbjct 40735 AGA-TGGACGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACCCTCCATCTTGTGC 40677 Query 31404 TTAGACTGAGGGGCGG 31419 | | |||||||| || Sbjct 40676 TGCGCCTGAGGGGTGG 40661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444746854234080