Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq56122 114 2e-20 seq35121 109 7e-19 seq2364 84.2 3e-11 >seq56122 Length=31370 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || || || ||||| ||||| | ||| | Sbjct 23628 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 23569 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 23568 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 23509 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 23508 CAACCACTCTCTCACC 23493 >seq35121 Length=13111 Score = 109 bits (120), Expect = 7e-19 Identities = 98/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 9473 AAACA-ATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCA 9531 ||||| | |||||||| | ||| ||||| |||||||| || || | ||||||||||||| Sbjct 4956 AAACATACCCTGCTCCGAATTTGCTGAAGTCTCTCTTCGACTGCAAGGTATATGCAGTCA 5015 Query 9532 GAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGA 9591 | |||||||| || |||||||| || ||||| ||||||| |||| | ||||||||| Sbjct 5016 GTGCAAGAAATACAGCAGTAGTAAGAATGAAGGCTTGCAAGACGATGGACGCATCATAGA 5075 Query 9592 AA 9593 || Sbjct 5076 AA 5077 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/171 (72%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 9251 AAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAA 9310 |||| ||| || |||| ||| ||||||||||| |||||||||| ||||| | || | Sbjct 3680 AAGC-GTAGTAGGTGCAGGAAGAGATTGATGATGTCCAAGTAGAGGTTGATTGCAGCCAG 3738 Query 9311 CACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCC 9370 | || |||||||| || | || || || || | || |||||||| ||||| ||||| Sbjct 3739 TATGTACTCTTCAGGGGATAATTTGTGCATCAGCAATTGAGTGTCATAAATAATAAATCC 3798 Query 9371 GCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCCACTGTTTCACT 9421 ||||| | ||| || ||| |||| | |||| ||| | ||| || || Sbjct 3799 ACAGAACAGAAGAGCTCCAGCCGCAGCAAACACCAACTCTATTGTCTCGCT 3849 >seq2364 Length=7247 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| |||||||||||||||||||| || | || | ||||||| || || Sbjct 5912 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGTGCAAAGAAAAGGTCTCTGGCTCGTTGC 5853 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || || || || ||||| || | || || || | | || || ||||||| || Sbjct 5852 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGAAATTCAAAGATGTCCAAATGCCAGGGC 5793 Query 66180 TCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 5792 TCCAGGTAGATGGCAAAAGCCCCAGG 5767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656667443626160