Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq169721 120 3e-22 seq56122 105 6e-18 seq77566 86.0 6e-12 seq26289 86.0 6e-12 >seq169721 Length=3200 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||||| || |||||||| ||||| || | ||| ||||| ||||||| ||||| Sbjct 2401 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 2460 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | |||||| |||| || || || || || ||||| ||||| || ||||| || || | Sbjct 2461 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAG 2520 Query 13802 CTATTAGTCGTTCTCC 13817 ||| || |||||||| Sbjct 2521 CTACTACACGTTCTCC 2536 >seq56122 Length=31370 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || || || || | |||||||||| || | || | Sbjct 23628 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 23569 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| ||||| || || || |||||||| || || |||||||||||||| | Sbjct 23568 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 23509 Query 13802 C 13802 | Sbjct 23508 C 23508 >seq77566 Length=1787 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| | | | |||||| || |||||||| | || |||||||| || ||||||| Sbjct 1404 TCTCTTTGGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGT 1463 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||| || || ||||| || ||||| ||||| | |||||||| Sbjct 1464 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGAGCTTCTG 1505 >seq26289 Length=38760 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| | | | |||||| || |||||||| | || |||||||| || ||||||| Sbjct 3 TCTCTTTGGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGT 62 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 |||| || || ||||| || ||||| ||||| | |||||||| Sbjct 63 TTTCCATGGCAATCTGGAAGCCATAGAAACAGCGAGCTTCTG 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477494183661360