Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq56122 129 8e-25 seq169721 120 4e-22 seq77566 93.3 6e-14 seq26289 93.3 6e-14 seq2364 89.7 7e-13 >seq56122 Length=31370 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | ||| ||||| || || || || ||||| ||||| | ||| | Sbjct 23628 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 23569 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||||| ||||| || || ||||||||||| ||||| ||||| ||||||| Sbjct 23568 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 23509 Query 42207 CAATAAGTCTCTCTCC 42222 ||| | |||||| || Sbjct 23508 CAACCACTCTCTCACC 23493 >seq169721 Length=3200 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||||||| || | |||||| ||||| |||||||| ||||||| || | |||| Sbjct 2401 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 2460 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || ||||| |||||||||||||| ||||| || || | Sbjct 2461 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAG 2520 Query 42207 C 42207 | Sbjct 2521 C 2521 >seq77566 Length=1787 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||| |||||||||||||| |||||||| ||||| Sbjct 1414 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 1473 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| | || || || || || |||||| Sbjct 1474 AATCTGGAAGCCATAGAAACAGCGAGCTTCTGTGACTTGCACTTCT 1519 >seq26289 Length=38760 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||| |||||||||||||| |||||||| ||||| Sbjct 13 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGC 72 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| || || |||||||| | || || || || || |||||| Sbjct 73 AATCTGGAAGCCATAGAAACAGCGAGCTTCTGTGACTTGCACTTCT 118 >seq2364 Length=7247 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||||||||||||||| || | || || ||||||| || ||| Sbjct 5912 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGTGCAAAGAAAAGGTCTCTGGCTCGTTGC 5853 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || || ||||| || | || || || | | || || ||||||| || Sbjct 5852 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGAAATTCAAAGATGTCCAAATGCCAGGGC 5793 Query 72142 TCCAAGTATATGGC 72155 |||| ||| ||||| Sbjct 5792 TCCAGGTAGATGGC 5779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 669604187200240