Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq116889 174 4e-38 seq43620 168 2e-36 seq56122 113 1e-19 >seq116889 Length=707 Score = 174 bits (192), Expect = 4e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || ||||| ||||| || ||||||||| Sbjct 638 ATGCCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCA 579 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| || || || ||||| || || |||||||| || |||||| Sbjct 578 GACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGA 519 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| || ||||| || ||||| || | ||| || || || || Sbjct 518 GGAATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCA 459 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| ||||| || || || ||||| |||||||| ||| Sbjct 458 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTG 405 >seq43620 Length=30502 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 4333 GCTTTATGGTGGTATTATGTCTCTAAAGGAATCGAATATTTGGATACAGTATTCTTCATC 4274 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 4273 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 4214 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 4213 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 4171 >seq56122 Length=31370 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| |||||| Sbjct 23505 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 23564 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| |||||||| | |||||||| || ||| | || ||||| || Sbjct 23565 CTGAAGAAGAGGGGCCTGATGCCAGGGCTGACTTTCTCCAATGAACTTATTAGCAGAGAT 23624 Query 269258 GA 269259 || Sbjct 23625 GA 23626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148699114123592