Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq45708 149 9e-31 seq1786 122 1e-22 >seq45708 Length=22708 Score = 149 bits (164), Expect = 9e-31 Identities = 222/314 (71%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | |||| Sbjct 18872 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 18813 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| || || | ||| || |||||||| || |||||||| | |||| Sbjct 18812 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 18753 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || ||||||| ||||| || || || || || || | ||| | || Sbjct 18752 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 18693 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | |||||||||||||| || || |||| || || | || || | ||||| ||||| Sbjct 18692 TTTCACCGAAGATGGCACCTGGTCGTGGCTGCTCTACAAGGAGGCCTGGGTACAGCTCCA 18633 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-- 8976 ||| || |||||||| ||||| | | ||| || || ||||| ||||| ||||| Sbjct 18632 TAGCATCAATGTCTCCATAAAGCTCTTCCAATTCAGCTGCCATTTCTTTTTCCCCTGTAA 18573 Query 8977 TTTATTAATaaaaa 8990 || |||| |||||| Sbjct 18572 TTGATTAGTAAAAA 18559 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || ||||| || || ||| ||| ||||| || || ||||||| Sbjct 16773 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 16714 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || |||| |||||||||||| ||||| || |||| ||||||||| | || || Sbjct 16713 ATGTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGAGTACATCATCAAGCCTGGG 16654 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || || |||| | ||| | ||| || | | ||||| Sbjct 16653 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 16594 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 16593 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 16534 Query 9862 TG 9863 || Sbjct 16533 TG 16532 >seq1786 Length=47433 Score = 122 bits (134), Expect = 1e-22 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| |||| |||||| || || || ||||| ||||| ||||| Sbjct 7264 TCACCAATGAGGATGAGACGAGCGGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 7205 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||||||| || || || || | |||||| || | ||||||| || |||||||| Sbjct 7204 TCCCGTTTCAGTACGTCACAGACACGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 7145 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || || |||| ||| || || |||| || || | ||||| || | | | ||| Sbjct 7144 CACAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCTATCGCCAGCTGCTTCTCCTTGGGG 7085 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 | | || || |||| |||||| ||| || |||| |||||| ||||||||||| Sbjct 7084 ATGGCAGGCGGGTAGACCATGTGAACCGGGGCATCGGTGACCGGGGGGGGATACA 7030 Score = 122 bits (134), Expect = 1e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || ||||||| ||||| |||||||||||||| | |||| Sbjct 10377 TCTTAACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGG 10318 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 10317 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGC 10258 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || ||||| ||||||| |||| || || | || || || | || ||||||| Sbjct 10257 TTTCCCCAAAGATTCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCA 10198 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 || || |||||||| || || Sbjct 10197 GCGCGTCAATGTCTCCATAGAG 10176 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || ||||| || |||||| |||| |||||| | | || || ||| | ||| | | Sbjct 6521 CTCACCCCGTGCCCCAGTGCTTTGGTGAAGCCGCGTCCCATCTTCCCAGAC--GTCTTGA 6464 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| |||||||| ||| | || ||||||||||| | ||||||||||||||||| Sbjct 6463 AGAACTGGTGGGTGAAATGCTGGGCGAAGAAGGCAAACATCAGGTTGGTGCCCTGGGGAT 6404 Query 10147 CGGGAGTGAAGGTCCTCCGAAGAAG 10171 | | ||| ||||||| || || Sbjct 6403 CAGCTTCGAACTTCCTCCGCAGCAG 6379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706904279790560