Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq33582 116 6e-22 seq73300 109 9e-20 seq33836 91.5 2e-14 >seq33582 Length=2583 Score = 116 bits (128), Expect = 6e-22 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| | || ||||| || ||||| || ||||||||||| |||||| Sbjct 349 GCCAAGCGTCACCGCAAAGTGCTGCGAGACAATATCCAGGGCATCACCAAGCCGGCTATC 408 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 409 CGCCGCCTAGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACG 468 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| ||| |||| || || || || || ||| Sbjct 469 CGCGGCGTGTTGAAAGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACTTACACAGAG 528 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGA 16644 ||||| || | ||||| || || | ||||| Sbjct 529 CACGCCAAGAGAAAGACGGTGACTGCGATGGA 560 >seq73300 Length=5486 Score = 109 bits (120), Expect = 9e-20 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || || || ||||| ||||||||||| || || Sbjct 5289 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAATATTCAAGGCATCACCAAGCCGGCCAT 5348 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 5349 CCGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 5408 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| ||||||| ||| ||| |||| || || || ||| || || Sbjct 5409 GCGCGGCGTGTTGAAAGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACGGA 5468 Query 16612 GCACGCTAAACGTAAGAC 16629 |||||| || | ||||| Sbjct 5469 GCACGCCAAGAGAAAGAC 5486 >seq33836 Length=1036 Score = 91.5 bits (100), Expect = 2e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || || || ||||| ||||||||||| || || Sbjct 165 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAATATTCAAGGCATCACCAAGCCGGCCAT 106 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || ||||| | || || | |||| || |||| Sbjct 105 CCGCCGCCTGGCTCGGCGTGGCGGCGTGAAGCGCATTTCGGGGCTCATCTACGAGGAGAC 46 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || ||||| ||||||| ||| ||| |||| Sbjct 45 GCGCGGCGTGTTGAAAGTCTTCCTGGAGAACGTGATCC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78907905590982