Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq27467 123 5e-23 seq88221 107 4e-18 seq2364 91.5 3e-13 seq56122 87.8 3e-12 >seq27467 Length=3426 Score = 123 bits (136), Expect = 5e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTA 244381 || |||||||| || |||||||| || ||||| || | || ||| |||| | Sbjct 2367 CCTTTGCTGACAGGAGAACCCTCGTATGTTTCATAGGGTCCCTGCTCCTTGGCAAGCTCA 2308 Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC-G 244440 ||||| | || | || |||| |||||||||||||||||| || ||||| | ||| | Sbjct 2307 CAGCTGGCTTCCAAAGCACCGTAATAGATGGTCTCGAAGATCTGCTGGTTCAAG-CGCTG 2249 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | | ||||||| | ||||| |||||| | || ||||| |||||||| Sbjct 2248 GGCCTCGGGACTCTCAAAGGGGAACCTCATCAGGATGAAGGCATCTGCCAGGCCCTGCAC 2189 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 |||||||||||||| | ||| ||| ||||||||||| Sbjct 2188 CCCGATGCCGATGGGACGGTGGCGCCTGTTGGAGCGC 2152 >seq88221 Length=1045 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 |||||||| | |||| |||| || || || || || ||||| ||||| ||||||||| Sbjct 708 ACCTCCTCTTTGCTGGTATACTCCACGATTTCTGTACACAGGTTGCTGCATTTGATGGTG 767 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| ||| || ||| ||| |||||||| ||| |||||||||||| |||| Sbjct 768 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTG 827 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885 |||||||| ||| | ||| || | || |||||| | | ||||| ||| |||| Sbjct 828 CCGGTCTCAGTCTGTGACTCGATGATGGAGTACCAGAGCTGCTGGGCCTTCACCACCCTG 887 Query 244886 CG 244887 || Sbjct 888 CG 889 >seq2364 Length=7247 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||| || || ||| ||||| |||| | ||||| || Sbjct 5907 CTTCATGAAGAGATCAGGAATCCAAAGTGCAAAGAAAAGGTCTCTGGCTCGTTGCTCTTC 5848 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| ||| |||| ||| ||||||| ||| | ||||||||||||| Sbjct 5847 TTTCCCAGTGTTCTTCTTCAAGTCCAGAAATTCAAAGATGTCCAAATGCCAGGGCTCCAG 5788 Query 245128 GTAGA 245132 ||||| Sbjct 5787 GTAGA 5783 >seq56122 Length=31370 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 23493 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 23552 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| || || || ||||| || ||||| Sbjct 23553 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCAGGGCTGACTTTCTCCAATGAACTT 23612 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 23613 ATTAGCAGAGATGAGG 23628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942179330990240