Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq116889 140 8e-28 seq45594 87.8 4e-12 >seq116889 Length=707 Score = 140 bits (154), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || ||||| | ||| ||| || ||||| ||||||| Sbjct 639 CATG-CCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTATAGT 581 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || |||||||||||||| | || || || ||||||||||| | ||| || | Sbjct 580 CAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAG 521 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 || || |||||||| ||||||||||| || ||||| || || || | || || | | Sbjct 520 GAGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATGGTGTCACTGGGCT 461 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 460 CAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 409 >seq45594 Length=40842 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||| || ||||| || ||||| | || |||||||| ||| Sbjct 40676 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 40735 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || ||||||||||| | ||| || | || || ||||| || ||| Sbjct 40736 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 40795 Query 288382 TGGATTTTCGCTTTCACGTTTTCTAT 288407 ||||| || || ||||||||||| || Sbjct 40796 TGGATCTTGGCCTTCACGTTTTCAAT 40821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176888872046372