Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq45708 147 3e-30 seq1786 114 2e-20 >seq45708 Length=22708 Score = 147 bits (162), Expect = 3e-30 Identities = 210/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || ||| | Sbjct 18872 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 18813 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 18812 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 18753 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || ||||||| ||||||| || || || || || | ||| | || Sbjct 18752 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 18693 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||||||||||||||| || || || | || || | || ||| | ||| || || | Sbjct 18692 TTTCACCGAAGATGGCACCTGGTCGTGGCTGCTCTACAAGGAGGCCTGGGTACAGCTCCA 18633 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || ||||||| || || || || || || || ||| Sbjct 18632 TAGCATCAATGTCTCCATAAAGCTCTTCCAATTCAGCTGCCATTTCTTTTTCCCCT 18577 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || ||||| || ||||| || Sbjct 16773 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 16714 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||| | ||||||||| ||||||||||| || | ||||||||| || || || Sbjct 16713 ATGTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGAGTACATCATCAAGCCTGGG 16654 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 16653 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 16594 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 16593 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 16534 Query 9967 TG 9968 || Sbjct 16533 TG 16532 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | ||| ||| | ||| Sbjct 18063 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATTTGGAAAGTG 18004 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| || || || |||||||||||| Sbjct 18003 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 17944 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 17943 TATTGAAATCGCTGGT--TGAACAGGAGCTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 17886 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 17885 CACTCAAGTGTTGTACATA 17867 >seq1786 Length=47433 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| ||||| ||||||||||||||| | |||||||||||| ||| | | ||||| Sbjct 10351 CCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCCCC 10292 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||||||||| || | ||| | ||||| || || ||||| | ||| | Sbjct 10291 TTCAGGGAAAACGGAGCTCCAATCTCCACCATGCTTTCCCCAAAGATTCCGTTGGGTTGG 10232 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | |||| || | || || | ||| |||||||| || Sbjct 10231 GGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCAGCGCGTCAATGTCTCCATAGAGCTCT 10172 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 | || || || ||| |||| | ||| ||| || Sbjct 10171 TGCAGTTCTGCTGCTTTCTCTTCCTCTCCTGCA 10139 Score = 86.0 bits (94), Expect = 9e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||| | |||| | | ||| ||| Sbjct 9043 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACTCTTC--CCCCTGGATGA 8986 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || || |||| ||| |||||| | ||||| ||||| || | || || | Sbjct 8985 CGAAGGAGTCGGGCATCAGCCCGTGCCAGTGATAGAGCTGGTTGAATTCCACTGCGATGC 8926 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 | ||| ||||||| || || || ||||| | ||| |||||||| | || | || Sbjct 8925 GATTCCGGTACTGGAACTGTGTCCCAAACAGCAGCTCGGGGTCAAACTTGAGGCTCAGGT 8866 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||||||||||| ||||||||||| | | || || || |||||||| ||||| Sbjct 8865 AGTACCCGCTGAGGTGCTGGACATAGTCTTCAATGATGATCTTAATGGTCTCCCC 8811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722072707411600