Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq144538 127 2e-24 seq45594 104 2e-17 seq56122 84.2 2e-11 seq26289 82.4 8e-11 >seq144538 Length=901 Score = 127 bits (140), Expect = 2e-24 Identities = 148/197 (75%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | Sbjct 199 AAACATGCAGATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTGGAGGTGGAGCC 140 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||||| | | | |||| | || | || |||| ||||| || || ||||| ||| Sbjct 139 CAGCGACACCATTGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCACCCG 81 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| |||| || | || ||||| |||||||| || | |||||||| |||| Sbjct 80 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACT 21 Query 38419 ACAACATCCAAAAGGAA 38435 |||||||||| |||||| Sbjct 20 ACAACATCCAGAAGGAA 4 >seq45594 Length=40842 Score = 104 bits (114), Expect = 2e-17 Identities = 135/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 38289 GACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGG 38347 || || ||| ||| |||| | | | ||||| | || | || |||| ||||| || || Sbjct 40842 GAGGTTGAGCCCAGTGACACCATTGAAAACG-TGAAGGCCAAGATCCAGGACAAGGAAGG 40784 Query 38348 AATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCAC 38407 ||||| | ||||| ||| |||| || | ||| ||||| |||||||| || | ||||| Sbjct 40783 CATTCCTCCTGACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCAC 40724 Query 38408 CCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 ||| |||||||||||||| |||||| | || || ||| | |||||||| |||| || Sbjct 40723 CCTGTCTGACTACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGG 40664 Query 38468 CGGC 38471 ||| Sbjct 40663 TGGC 40660 >seq56122 Length=31370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 23628 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 23569 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 23568 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 23509 Query 133037 CCACCA 133042 | |||| Sbjct 23508 CAACCA 23503 >seq26289 Length=38760 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || ||||| || || |||||||| ||| || || Sbjct 1307 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCAGCCTTCTTGTACATCTGCCAAATATCGTG 1366 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || || || || ||||||||||| || |||| |||||||||| Sbjct 1367 GTACTGGATGGGGAATATGACGAAGCGGCGGGGGTTGTCCCGCAGCAGCGGCTCC 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499028817276160