Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq73174 127 2e-23 seq49277 127 2e-23 seq84638 105 5e-17 seq38018 105 5e-17 seq70212 95.1 9e-14 >seq73174 Length=5264 Score = 127 bits (140), Expect = 2e-23 Identities = 900/1440 (63%), Gaps = 26/1440 (2%) Strand=Plus/Plus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 ||||| | ||||| || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 3716 CGGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 3775 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | | || || || || || | | ||| | ||||| || || || | Sbjct 3776 CTCCACGGGGCGCTGGGGGTATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 3835 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 | || | | ||||||||| | | |||| | || | || || ||||||| Sbjct 3836 TCGTCATAGCCCTCTCACCCTCGTATACCTGGACAAGGACGCTGCTCTGGTTGTCTGAAT 3895 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 3896 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCT 3954 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| || | || | || ||||| |||||||| | || | Sbjct 3955 GTCATCACTCCACCAGCTGTCTCAATGCCCAAGGACAGAGGGGTGACATCCAACAGCAGC 4014 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || ||| | | || | || ||||||||||| | ||||||||| Sbjct 4015 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCG 4074 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT- 517674 || |||||||| ||||| || || | | | || || | ||| |||||||| || | Sbjct 4075 TAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 4134 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || | || || | | ||| |||||||| | || || || || | || || || || Sbjct 4135 TGTAGCAACTTCTGG-ATCTTGGGAATACGGGTAGAGCCACCCACCAGCACGATCTCTTG 4193 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | ||| || || || || | ||| | | | || || || || || || | Sbjct 4194 GATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTGCC 4253 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATA 517851 | || | |||| | || || || || || | |||| ||| || || | Sbjct 4254 ACGGAAGAGATCTGCATTGAGCTCCTCAAAGCGGGCACGGGTAATGGAGGTG----TAGA 4309 Query 517852 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | ||||| || ||||| | || |||| ||||| ||| ||| || ||||| || | Sbjct 4310 AGTCAATACCCTCGAAGAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGGG 4369 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 517970 || || || | ||||| ||||| | || | | | ||| ||| ||| Sbjct 4370 TGCGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACCGCTC--GCTTGTTGCCAGC 4427 Query 517971 AATCTGTT--TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTA 518026 ||| | || | || | |||||| ||||| ||| | ||| | || | ||| || Sbjct 4428 AATGTCACGCTTGTGCTTACGCTTGAATTCTTCCACAAA--ATGGTTCACCATACGGTTG 4485 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || || || |||| | || | || | || | | || | || | |||| Sbjct 4486 TCAAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCA 4545 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || |||| | | | | ||||| || || || |||| ||||| || || ||| Sbjct 4546 TCCTCAATGGTAAGGATGGACACATCGAAAGTACCCCCTCCCAAGTCAAAGATGAGCACA 4605 Query 518147 TTCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 ||| | || || | || || || | ||||| || | |||||| || || Sbjct 4606 TTCTTCTCACCAGCTCGAGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTG 4665 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 |||||||| ||||| | || |||||||| |||| || | || |||||||| ||||| Sbjct 4666 GGTTCATTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCC 4725 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | || || || || || || ||||| || ||||| ||||||| |||| Sbjct 4726 TGACGCTGGGAGTCATTGAAGTAAGCAGGCACTGTAATGACGGCATTCTGCACTTTGCGC 4785 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | ||| || || | | ||||| || ||| | ||| || || | ||| Sbjct 4786 CCCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTTAGGACCATAGAGCTGATCTCCTCT 4845 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 ||| | | ||| || | || |||| | | || || || || Sbjct 4846 GGGAAGAAAGTCTTCATCTCCCCCTTGTACTCCACTTGTACCTTGGGCTTGCCACTGTCA 4905 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 || | || || ||||||| |||||||| || || || | |||||| | | | Sbjct 4906 TTCACCACACGGAAGGGCCAGTGCTTCATATCGGACTGCACTGTGGGGTCATCATACTTG 4965 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 | || || | || || |||||||| || || ||||| || || || || | || | Sbjct 4966 CGGCCGATGAGACGCTTAGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTC 5025 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||||||||| || || || | ||||| || || || | ||||| || || ||| Sbjct 5026 TTGGCTGCATCACCGATGAGGCGCTCTGTATCAGTGAAGGCCACATAGCTGGGTGTGGTG 5085 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 || || ||||| ||||| ||||| || || ||||| |||| || | ||||| || ||| Sbjct 5086 CGGTTCCCTTGGTCATTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAA 5145 >seq49277 Length=55671 Score = 127 bits (140), Expect = 2e-23 Identities = 900/1440 (63%), Gaps = 26/1440 (2%) Strand=Plus/Minus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 ||||| | ||||| || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 53177 CGGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 53118 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 | || | | || || || || || | | ||| | ||||| || || || | Sbjct 53117 CTCCACGGGGCGCTGGGGGTATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 53058 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 | || | | ||||||||| | | |||| | || | || || ||||||| Sbjct 53057 TCGTCATAGCCCTCTCACCCTCGTATACCTGGACAAGGACGCTGCTCTGGTTGTCTGAAT 52998 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 52997 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCT 52939 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| || | || | || ||||| |||||||| | || | Sbjct 52938 GTCATCACTCCACCAGCTGTCTCAATGCCCAAGGACAGAGGGGTGACATCCAACAGCAGC 52879 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || || | || ||| | | || | || ||||||||||| | ||||||||| Sbjct 52878 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCG 52819 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT- 517674 || |||||||| ||||| || || | | | || || | ||| |||||||| || | Sbjct 52818 TAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 52759 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || | || || | | ||| |||||||| | || || || || | || || || || Sbjct 52758 TGTAGCAACTTCTGG-ATCTTGGGAATACGGGTAGAGCCACCCACCAGCACGATCTCTTG 52700 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | ||| || || || || | ||| | | | || || || || || || | Sbjct 52699 GATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTGCC 52640 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATA 517851 | || | |||| | || || || || || | |||| ||| || || | Sbjct 52639 ACGGAAGAGATCTGCATTGAGCTCCTCAAAGCGGGCACGGGTAATGGAGGTG----TAGA 52584 Query 517852 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | ||||| || ||||| | || |||| ||||| ||| ||| || ||||| || | Sbjct 52583 AGTCAATACCCTCGAAGAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGGG 52524 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 517970 || || || | ||||| ||||| | || | | | ||| ||| ||| Sbjct 52523 TGCGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACCGCTC--GCTTGTTGCCAGC 52466 Query 517971 AATCTGTT--TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTA 518026 ||| | || | || | |||||| ||||| ||| | ||| | || | ||| || Sbjct 52465 AATGTCACGCTTGTGCTTACGCTTGAATTCTTCCACAAA--ATGGTTCACCATACGGTTG 52408 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || || || |||| | || | || | || | | || | || | |||| Sbjct 52407 TCAAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCA 52348 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || |||| | | | | ||||| || || || |||| ||||| || || ||| Sbjct 52347 TCCTCAATGGTAAGGATGGACACATCGAAAGTACCCCCTCCCAAGTCAAAGATGAGCACA 52288 Query 518147 TTCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 ||| | || || | || || || | ||||| || | |||||| || || Sbjct 52287 TTCTTCTCACCAGCTCGAGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTG 52228 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 |||||||| ||||| | || |||||||| |||| || | || |||||||| ||||| Sbjct 52227 GGTTCATTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCC 52168 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | || || || || || || ||||| || ||||| ||||||| |||| Sbjct 52167 TGACGCTGGGAGTCATTGAAGTAAGCAGGCACTGTAATGACGGCATTCTGCACTTTGCGC 52108 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | ||| || || | | ||||| || ||| | ||| || || | ||| Sbjct 52107 CCCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTTAGGACCATAGAGCTGATCTCCTCT 52048 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 ||| | | ||| || | || |||| | | || || || || Sbjct 52047 GGGAAGAAAGTCTTCATCTCCCCCTTGTACTCCACTTGTACCTTGGGCTTGCCACTGTCA 51988 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 || | || || ||||||| |||||||| || || || | |||||| | | | Sbjct 51987 TTCACCACACGGAAGGGCCAGTGCTTCATATCGGACTGCACTGTGGGGTCATCATACTTG 51928 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 | || || | || || |||||||| || || ||||| || || || || | || | Sbjct 51927 CGGCCGATGAGACGCTTAGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGTTC 51868 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||||||||| || || || | ||||| || || || | ||||| || || ||| Sbjct 51867 TTGGCTGCATCACCGATGAGGCGCTCTGTATCAGTGAAGGCCACATAGCTGGGTGTGGTG 51808 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 || || ||||| ||||| ||||| || || ||||| |||| || | ||||| || ||| Sbjct 51807 CGGTTCCCTTGGTCATTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAA 51748 >seq84638 Length=1738 Score = 105 bits (116), Expect = 5e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 1437 TGTTGTAGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1496 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 1497 TCATTATGGTGCACCAAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCTGGTCG 1556 Query 367113 TGATGG 367118 |||||| Sbjct 1557 TGATGG 1562 >seq38018 Length=25554 Score = 105 bits (116), Expect = 5e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 302 TGTTGTAGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 243 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 242 TCATTATGGTGCACCAAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCTGGTCG 183 Query 367113 TGATGG 367118 |||||| Sbjct 182 TGATGG 177 >seq70212 Length=15332 Score = 95.1 bits (104), Expect = 9e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | |||||||||||||| |||||| |||| | || || ||||| || |||| Sbjct 2927 CAAACACTGTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCACCGATCAACC 2868 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | || || |||||| || || ||||| ||||| || |||| Sbjct 2867 TCTCGGTGTCTGTGAAGGCCACGTAGCTTGGAGTGGTCCGGTTACCCTGATCGTTGGCAA 2808 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || |||| || ||||||| ||||| | || || || | ||| | Sbjct 2807 TGATTTCCACCTTCCCATGCTGGAATACACCAACACAGGAGTAGGTGGTGCCAAGATCGA 2748 Query 518703 TACCAATAGC 518712 | |||| ||| Sbjct 2747 TTCCAACAGC 2738 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 ||||| | |||| |||||| || || ||||||||||| | |||||| || |||||||| Sbjct 5711 TTATCCACAGCAGACACATTCAGGATGCCATTGGCATCAATATCAAAGGTTACTTCAATC 5652 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 ||||| || ||||| ||||||| ||||| || || | ||| | ||||| || Sbjct 5651 TGAGGTACACCTCTGGGAGCAGGGGGGATACCAGTCAGCTCAAACTTGCCCAGCAAGTTG 5592 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTC 517398 || |||||||| | ||||| ||||| Sbjct 5591 TTGTCTTTAGTCATGGCACGTTCTCCCTC 5563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3771742627403644