Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq116889 136 9e-27 seq45594 116 8e-21 seq144538 109 1e-18 seq79253 84.2 5e-11 >seq116889 Length=707 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || ||||| || || ||||| || || || || || || || | || || Sbjct 630 TCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCAGACAGGGT 571 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| |||||||| || |||||||| || | || ||||| ||||||||||| Sbjct 570 GCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCC 511 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||||||||| || |||||| ||| || |||||||||||||| ||| || || || Sbjct 510 TTCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 454 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| || |||| || || || || | ||||| Sbjct 453 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 409 >seq45594 Length=40842 Score = 116 bits (128), Expect = 8e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || || | |||||||| Sbjct 40679 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCC 40738 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || ||||| |||||||||||||| ||||| || Sbjct 40739 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGG 40798 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| ||||| ||||||||||| Sbjct 40799 ATCTTGGCCTTCACGTTTTCAATGGTGTC 40827 >seq144538 Length=901 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 194946 GGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGC 195005 ||| || || || || ||||| || | || || | |||||||| |||||||| || || Sbjct 1 GGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGC 60 Query 195006 GAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGAC 195065 ||||| || | || ||||| || ||||||||||| ||||| || || || ||| || Sbjct 61 AAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCAC 120 Query 195066 GTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTT 195125 ||||||||||||||| ||||| || ||||| | ||||| || || | || || Sbjct 121 GTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGTGTCTT 180 Query 195126 TACGAACACTTGCAT 195140 ||||| | ||||| Sbjct 181 CACGAAGATCTGCAT 195 >seq79253 Length=1694 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||| || ||||| || | || || | ||||||||||||||||| || || |||| Sbjct 661 CTTTTTGGATGTTGTAGTCAGACAGCGTGCGTCCATCTTCGAGCTGCTTTCCAGCAAAGA 602 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || ||||| |||||||||||| Sbjct 601 TCAGTCGCTGCTGGTCAGGAGGAATGCCT 573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106880581957058