Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq73174 150 1e-30 seq49277 150 1e-30 seq70212 120 2e-21 seq116889 93.3 3e-13 >seq73174 Length=5264 Score = 150 bits (166), Expect = 1e-30 Identities = 363/543 (67%), Gaps = 5/543 (1%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || | || ||||| || ||| || ||||| | || |||| ||| Sbjct 5177 GCAATCGGCATCGACCTGGGCACCACGTACTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 5118 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||||||||| ||||| ||| | || || || ||||| | ||||| Sbjct 5117 GTGGAGATCATTGCCAATGACCAAGGGAACCGCACCACACCCAGCTATGTGGCCTTCACT 5058 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | ||||||||||| || | || | || || |||||||| Sbjct 5057 GATACAGAGCGCCTCATCGGTGATGCAGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 4998 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || ||||||||||| ||| | || || | | | | |||| | || || ||| | Sbjct 4997 ACCATCTTTGATGCTAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCC 4938 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||||||||||| ||||| |||| | || |||| ||| || || | | ||| Sbjct 4937 GATATGAAGCACTGGCCCTTCCGTGTGGTGAATGACAGTGGCAAGCCCAAGGTACAAGTG 4878 Query 550291 TACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || | ||| || | || | ||| ||||| | || |||||||| ||| Sbjct 4877 GAGTACAAGGGGGAGATG-AAGACTTTCTTC-CCAGAGGAGATCAGCTCTATGGTCCTAA 4820 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 || ||||| | | || || | | | || | |||| | |||| || || | Sbjct 4819 CCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCCGTCATTA 4760 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || |||||||| || ||||| || || ||||||||||| || Sbjct 4759 CAGTGCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAAGATGCTGGCACCATCA 4700 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| |||||||| | ||||||||||||||||| || || ||||| | || ||||| | Sbjct 4699 CTGGCCTTAATGTGATGCGTATTATCAATGAACCCACAGCAGCTGCTATAGCCTATGG-C 4641 Query 550530 TTG 550532 ||| Sbjct 4640 TTG 4638 >seq49277 Length=55671 Score = 150 bits (166), Expect = 1e-30 Identities = 363/543 (67%), Gaps = 5/543 (1%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || | || ||||| || ||| || ||||| | || |||| ||| Sbjct 51716 GCAATCGGCATCGACCTGGGCACCACGTACTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 51775 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || ||||||||||| ||||| ||| | || || || ||||| | ||||| Sbjct 51776 GTGGAGATCATTGCCAATGACCAAGGGAACCGCACCACACCCAGCTATGTGGCCTTCACT 51835 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | ||||||||||| || | || | || || |||||||| Sbjct 51836 GATACAGAGCGCCTCATCGGTGATGCAGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 51895 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || ||||||||||| ||| | || || | | | | |||| | || || ||| | Sbjct 51896 ACCATCTTTGATGCTAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCC 51955 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 ||||||||||| ||||| |||| | || |||| ||| || || | | ||| Sbjct 51956 GATATGAAGCACTGGCCCTTCCGTGTGGTGAATGACAGTGGCAAGCCCAAGGTACAAGTG 52015 Query 550291 TACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | || | ||| || | || | ||| ||||| | || |||||||| ||| Sbjct 52016 GAGTACAAGGGGGAGATG-AAGACTTTCTTC-CCAGAGGAGATCAGCTCTATGGTCCTAA 52073 Query 550350 TGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 || ||||| | | || || | | | || | |||| | |||| || || | Sbjct 52074 CCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCCGTCATTA 52133 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 | || || || || || |||||||| || ||||| || || ||||||||||| || Sbjct 52134 CAGTGCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAAGATGCTGGCACCATCA 52193 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| |||||||| | ||||||||||||||||| || || ||||| | || ||||| | Sbjct 52194 CTGGCCTTAATGTGATGCGTATTATCAATGAACCCACAGCAGCTGCTATAGCCTATGG-C 52252 Query 550530 TTG 550532 ||| Sbjct 52253 TTG 52255 >seq70212 Length=15332 Score = 120 bits (132), Expect = 2e-21 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| ||||| ||||| || ||||| || ||||| ||||| ||||||| Sbjct 3691 ATGCTGTAGTGACTGTCCCAGCCTATTTCAACGACTCTCAGCGTCAGGCTACAAAAGATG 3750 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || ||||||||||| || || ||||||||| Sbjct 3751 CTGGAACCATTGCAGGGCTCAATGTCCTGCGAATTATCAATGAGCCAACAGCTGCTGCAA 3810 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 3811 TAGCCTATGGTCTGGACAA 3829 Score = 95.1 bits (104), Expect = 1e-13 Identities = 225/340 (66%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 551899 TTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAA 551958 ||||||| || | || || ||||| | ||||| || |||| || ||| | || || Sbjct 4152 TTCGTCGCCTCCGCACCGCGTGCGAGCGTGCCAAGCGTACTCTGTCTTCTAGCACGCAGG 4211 Query 551959 CCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGG 552018 ||| ||||||| | || || | | |||||| ||||| | |||| | || | || | Sbjct 4212 CCAGTATTGAAATTGACTCTCTCTATGAGGGCATTGACTTCTATACATCCATCACCAGAG 4271 Query 552019 CCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAG 552078 | |||||||| | | |||| || || | || | || ||||| || | | Sbjct 4272 CTCGCTTTGAAGAGTTGAATGCTGACCTGTTCCGCGGCACCCTGGATCCAGTGGAGAAGG 4331 Query 552079 TTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGAT 552138 | | | ||| | ||| |||| || ||| | | ||||| |||||||| |||||||| | Sbjct 4332 CTCTGCGGGATGCCAAGCTTGACAAGTCCCAGATCCATGATATTGTGCTGGTTGGTGGTT 4391 Query 552139 CTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAA 552198 |||| | || || || |||| || || | || |||||||| ||| | | | Sbjct 4392 CTACTCGTATCCCAAAGATTCAGAAACTGCTGCAGGATTTCTTCAATGGCAAAGAGCTGA 4451 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 | | || | ||||| ||||||||||| || |||||||| Sbjct 4452 ACAAGAGCATCAATCCTGATGAGGCTGTGGCTTATGGTGC 4491 Score = 86.0 bits (94), Expect = 5e-11 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| || ||||||||||| | || |||| || Sbjct 2737 AGCTGTTGGAATCGATCTTGGCACCACCTACTCCTGTGTTGGTGTATTCCAGCATGGGAA 2796 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| |||||||| ||||| |||||| | || |||||| || || | ||||| Sbjct 2797 GGTGGAAATCATTGCCAACGATCAGGGTAACCGGACCACTCCAAGCTACGTGGCCTTCAC 2856 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || | |||||||| ||||| | |||| || || ||||| ||| Sbjct 2857 AGACACCGAGAGGTTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AATCCAACC 2914 Query 550169 AATACTATTTTTG 550181 ||||| | |||| Sbjct 2915 AATACAGTGTTTG 2927 >seq116889 Length=707 Score = 93.3 bits (102), Expect = 3e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||||| || |||||||| ||||| ||| || || || || |||| || || Sbjct 629 CTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCAGACAGGGTG 570 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | ||||| || || || || || || || || || ||||| ||||||||||| ||| Sbjct 569 CGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCT 510 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 ||||| || || |||||| || || |||||| || ||| || | | || || Sbjct 509 TCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGG 450 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || || || || ||||| Sbjct 449 GTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4019619509667260