Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq42193 104 2e-17 seq4523 100 2e-16 >seq42193 Length=10335 Score = 104 bits (114), Expect = 2e-17 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| || Sbjct 881 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 822 Query 30210 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||||| || ||| |||| ||| ||| ||| |||| || || | || || | || | Sbjct 821 CCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGACCCATGAGCAT 763 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||| ||||| || || || | ||||||||||||| ||||| || || Sbjct 762 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 714 >seq4523 Length=8114 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| |||| || || |||||| | ||||| | |||||| || || Sbjct 2001 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGGA 1942 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| |||||||||||| ||||||| || ||| Sbjct 1941 ATGGAGAACCAGGTTTTTTTACCCATTATCAAGGCGTTCTGTTTACCT 1894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407706384539702