Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq73174 147 1e-29 seq49277 147 1e-29 seq70212 96.9 2e-14 seq84638 86.0 4e-11 seq38018 86.0 4e-11 >seq73174 Length=5264 Score = 147 bits (162), Expect = 1e-29 Identities = 367/552 (66%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || || || | || || || ||| ||| || | ||| | || |||| ||| Sbjct 5177 GCAATCGGCATCGACCTGGGCACCACGTACTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 5118 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || | || ||||| ||||| | || ||| Sbjct 5117 GTGGAGATCATTGCCAATGACCAAGGGAACCGCACCACACCCAGCTATGTGGCCTTCACT 5058 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | || || || ||||| || || | || | || || ||| || Sbjct 5057 GATACAGAGCGCCTCATCGGTGATGCAGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 4998 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || ||||||||||| | | || || || || | |||||| |||| || || || Sbjct 4997 ACCATCTTTGATGCTAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCC 4938 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA--G 474626 |||||| || ||||| || ||| | |||| |||| || || | || || | Sbjct 4937 GATATGAAGCACTGGCCCTTCCGTGTGGTGAATGACAGTGGCAAGCCCAAGGTACAAGTG 4878 Query 474627 CAATACACGCAGGTGAAACTAAACAATTT-TCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| ||| | | | || | ||| | || || | || || ||||| || Sbjct 4877 GAGTACA---AGGGGGAGATGAAGACTTTCTTCCCAGAGGAGATCAGCTCTATGGTCCTA 4821 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| ||||| | | || ||| | ||||| || | |||| |||| || || Sbjct 4820 ACCAAGATGAAGGAGATTGCTGAG-GCCTATCTGGGGCGCAAAGTGCAGAATGCCGTCAT 4762 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| || || || || || ||||| || || ||||| || || |||||||| || | || Sbjct 4761 TACAGTGCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAAGATGCTGGCACCAT 4702 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | || |||||||| | |||||||| |||||||| |||||||| || | || ||||| Sbjct 4701 CACTGGCCTTAATGTGATGCGTATTATCAATGAACCCACAGCAGCTGCTATAGCCTATGG 4642 Query 474865 TCTTGATAAGAA 474876 | || ||||| Sbjct 4641 CTTGGACAAGAA 4630 >seq49277 Length=55671 Score = 147 bits (162), Expect = 1e-29 Identities = 367/552 (66%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || || || | || || || ||| ||| || | ||| | || |||| ||| Sbjct 51716 GCAATCGGCATCGACCTGGGCACCACGTACTCTTGCGTGGGTGTCTTCCAGCATGGCAAA 51775 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||||||||| || | || ||||| ||||| | || ||| Sbjct 51776 GTGGAGATCATTGCCAATGACCAAGGGAACCGCACCACACCCAGCTATGTGGCCTTCACT 51835 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | || || || ||||| || || | || | || || ||| || Sbjct 51836 GATACAGAGCGCCTCATCGGTGATGCAGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 51895 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || ||||||||||| | | || || || || | |||||| |||| || || || Sbjct 51896 ACCATCTTTGATGCTAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACAGTGCAGTCC 51955 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA--G 474626 |||||| || ||||| || ||| | |||| |||| || || | || || | Sbjct 51956 GATATGAAGCACTGGCCCTTCCGTGTGGTGAATGACAGTGGCAAGCCCAAGGTACAAGTG 52015 Query 474627 CAATACACGCAGGTGAAACTAAACAATTT-TCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| ||| | | | || | ||| | || || | || || ||||| || Sbjct 52016 GAGTACA---AGGGGGAGATGAAGACTTTCTTCCCAGAGGAGATCAGCTCTATGGTCCTA 52072 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| ||||| | | || ||| | ||||| || | |||| |||| || || Sbjct 52073 ACCAAGATGAAGGAGATTGCTGAG-GCCTATCTGGGGCGCAAAGTGCAGAATGCCGTCAT 52131 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| || || || || || ||||| || || ||||| || || |||||||| || | || Sbjct 52132 TACAGTGCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACCAAAGATGCTGGCACCAT 52191 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | || |||||||| | |||||||| |||||||| |||||||| || | || ||||| Sbjct 52192 CACTGGCCTTAATGTGATGCGTATTATCAATGAACCCACAGCAGCTGCTATAGCCTATGG 52251 Query 474865 TCTTGATAAGAA 474876 | || ||||| Sbjct 52252 CTTGGACAAGAA 52263 >seq70212 Length=15332 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 |||||||| || ||| || || | ||| | || ||||| || |||||||||||| Sbjct 5581 ACTAAAGACAACAACTTGCTGGGCAAGTTTGAGCTGACTGGTATCCCCCCTGCTCCCAGA 5640 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || || ||||| |||||||| || |||||||||||||| ||||| || || ||||| || Sbjct 5641 GGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCCAATGGCATCCTGAATGTGTCT 5700 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 5701 GCTGTGGATAA 5711 Score = 95.1 bits (104), Expect = 8e-14 Identities = 221/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 || || || || ||||| ||||| |||| |||||| || || | | | ||||| || Sbjct 4166 ACCGCGTGCGAGCGTGCCAAGCGTACTCTGTCTTCTAGCACGCAGGCCAGTATTGAAATT 4225 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 || ||||| | ||| || ||||| | |||| || || || ||| |||||||| Sbjct 4226 GACTCTCTCTATGAGGGCATTGACTTCTATACATCCATCACCAGAGCTCGCTTTGAAGAG 4285 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || | | ||| | ||| | Sbjct 4286 TTGAATGCTGACCTGTTCCGCGGCACCCTGGATCCAGTGGAGAAGGCTCTGCGGGATGCC 4345 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || |||||||| || || ||||||| ||||| || || || ||||| || | || ||| Sbjct 4346 AAGCTTGACAAGTCCCAGATCCATGATATTGTGCTGGTTGGTGGTTCTACTCGTATCCCA 4405 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || ||||| |||| || || | || ||||| ||| || | || | || | | Sbjct 4406 AAGATTC-AGAAACTGCTG-CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 4463 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||| ||||| || ||||| || Sbjct 4464 ATCCTGATGAGGCTGTGGCTTATGGTGC 4491 >seq84638 Length=1738 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||| ||||| ||| || | || ||||| ||| Sbjct 1562 CCATCACGACCAGCTCTCCCAATTTCTTGGTAATAGGATTCCATTTCCTTTGGTGCACCA 1503 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || |||||||||||||| | ||| || Sbjct 1502 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCT 1443 Query 627889 AC 627890 || Sbjct 1442 AC 1441 >seq38018 Length=25554 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||| ||||| ||| || | || ||||| ||| Sbjct 177 CCATCACGACCAGCTCTCCCAATTTCTTGGTAATAGGATTCCATTTCCTTTGGTGCACCA 236 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || |||||||||||||| | ||| || Sbjct 237 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCT 296 Query 627889 AC 627890 || Sbjct 297 AC 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3260330557350152