Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq176385 221 1e-52 >seq176385 Length=8277 Score = 221 bits (244), Expect = 1e-52 Identities = 598/909 (66%), Gaps = 7/909 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 5960 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 5901 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| | ||||| ||| || | Sbjct 5900 TATTGGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTTAGATCTCCTACCCCAAAAA 5844 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || ||||| | || | Sbjct 5843 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGATACAT 5784 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| ||||||||||||| ||||| | ||| | || | |||||| || |||| Sbjct 5783 CCCCTTCAAAGTACTGCCACTTGACAAATCGGGCCAGTGCATTCATGTCAGAAACATCGT 5724 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 |||||| || || | ||| ||||| || || | | || | ||| | ||| |||||| Sbjct 5723 ATTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGCGATTCTCTGAATGGTTGCCCAC 5665 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || || || |||||||| ||||| || | |||||| ||||||| ||| ||| Sbjct 5664 AAGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCATTCAATGAACTTAAGTATTTTGCTG 5605 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | |||| || | |||| | || ||||| || || || || || || Sbjct 5604 CTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 5545 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 5544 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTGTTCTTTATTTTACCATCA 5485 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 5484 ATAACCTCATGGTGTTTTTTCCACCTTACTTCTTTATTAACAGGCATTTTTTCTGTTTCC 5425 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| ||||| | || | ||| | | || || || || |||| ||||| | Sbjct 5424 AAGCTGTTTGCACCTTTAAGGGCTTTTAATTTCTCTACAATTTCCTGGTTGGTCTTTATT 5365 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||| ||||| || | || || ||| Sbjct 5364 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGG 5305 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 5304 TCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATATACAACACTCTCT 5245 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | ||| | | ||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 5244 AACTGACTAGAAATAAAGATATTATCAAAACATGAGACTATTCCCCTCACAG-CAGCAAA 5186 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 5185 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 5126 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | ||| || | || || | |||||| || || |||| | ||| || ||||| |||| Sbjct 5125 TGACCTTAGAAGTCTGTCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCTAC 5066 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 5065 TGGAAATTC 5057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575898998676240