Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq73174 125 5e-23 seq49277 125 5e-23 seq84638 102 6e-16 seq38018 102 6e-16 seq70212 91.5 1e-12 >seq73174 Length=5264 Score = 125 bits (138), Expect = 5e-23 Identities = 904/1442 (63%), Gaps = 30/1442 (2%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | ||||| || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 3716 CGGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 3775 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || || || || | | ||| | ||||| || || || | Sbjct 3776 CTCCACGGGGCGCTGGGGGTATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 3835 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || | | ||||||||| | | |||| | || | || || ||||||| Sbjct 3836 TCGTCATAGCCCTCTCACCCTCGTATACCTGGACAAGGACGCTGCTCTGGTTGTCTGAAT 3895 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 3896 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCT 3954 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || | || ||||| |||||||| | || | Sbjct 3955 GTCATCACTCCACCAGCTGTCTCAATGCCCAAGGACAGAGGGGTGACATCCAACAGCAGC 4014 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || ||| | | || | || ||||||||||| | ||||||||| Sbjct 4015 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCG 4074 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT- 281841 || |||||||| ||||| || || | | | || || | ||| |||||||| || | Sbjct 4075 TAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 4134 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || | || || | | ||| |||||||| | || || || || | || || || || Sbjct 4135 TGTAGCAACTTCTGG-ATCTTGGGAATACGGGTAGAGCCACCCACCAGCACGATCTCTTG 4193 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| || || || || | ||| | | | || || || || || || | Sbjct 4194 GATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTGCC 4253 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATA 282018 | || | |||| | || || || || || | |||| ||| || || | Sbjct 4254 ACGGAAGAGATCTGCATTGAGCTCCTCAAAGCGGGCACGGGTAATGGAGGTG----TAGA 4309 Query 282019 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | ||||| || ||||| | || |||| ||||| ||| ||| || ||||| || | Sbjct 4310 AGTCAATACCCTCGAAGAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGGG 4369 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 282137 || || || | ||||| ||||| | || | | | ||| ||| ||| Sbjct 4370 TGCGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACCGCTC--GCTTGTTGCCAGC 4427 Query 282138 AATCTGTT--TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTA 282193 ||| | || | || | |||||| ||||| ||| | ||| | || | ||| || Sbjct 4428 AATGTCACGCTTGTGCTTACGCTTGAATTCTTCCACAAA--ATGGTTCACCATACGGTTG 4485 Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| || || || |||| | || | || | || | | || | || | |||| Sbjct 4486 TCAAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCA 4545 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 || |||| | | | | ||||| || || || |||| ||||| || || ||| Sbjct 4546 TCCTCAATGGTAAGGATGGACACATCGAAAGTACCCCCTCCCAAGTCAAAGATGAGCACA 4605 Query 282314 TTCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 ||| | || || | || || || | ||||| || | |||||| || || Sbjct 4606 TTCTTCTCACCAGCTCGAGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTG 4665 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||| ||||| | || |||||||| |||| || | || |||||||| ||||| Sbjct 4666 GGTTCATTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCC 4725 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT-CTGTTACTTCTTT 282486 || | || || || || || || ||||| || ||||| ||||||| ||| |||| Sbjct 4726 TGACGCTGGGAGTCATTGAAGTAAGCAGGCACTGTAATGACGGCATTCTGC-ACTTTGCG 4784 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 || | ||| || || | | ||||| || ||| | ||| || || | || Sbjct 4785 CCCCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTTAGGACCATAGAGCTGATCTCCTC 4844 Query 282547 TGGAGAATATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 282605 ||| ||| | | | || || | || |||| | | || || || Sbjct 4845 TGG-GAAGAAAGTCTTCATCTCCCCCTTGTACTCCACTTGTACCTTGGGCTTGCCACTGT 4903 Query 282606 CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 282665 |||| | || || ||||| | |||||||| || || || | |||||| | | | Sbjct 4904 CATTCACCACACGGAAGGGCCAGTGCTTCATATCGGACTGCACTGTGGGGTCATCATACT 4963 Query 282666 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGAT 282725 | || || | || || |||||||| || || ||||| || || | || | || | Sbjct 4964 TGCGGCCGATGAGACGCTTAGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGT 5023 Query 282726 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 282785 ||||||||||| || || || | ||||| || || || | ||||| || || | Sbjct 5024 TCTTGGCTGCATCACCGATGAGGCGCTCTGTATCAGTGAAGGCCACATAGCTGGGTGTGG 5083 Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 |||| || ||||| ||||| ||||| || || ||||| |||| || | ||||| || | Sbjct 5084 TGCGGTTCCCTTGGTCATTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGC 5143 Query 282846 AA 282847 || Sbjct 5144 AA 5145 >seq49277 Length=55671 Score = 125 bits (138), Expect = 5e-23 Identities = 904/1442 (63%), Gaps = 30/1442 (2%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | ||||| || |||||||||||||| | ||||| ||||| || || || |||| Sbjct 53177 CGGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 53118 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || || || || | | ||| | ||||| || || || | Sbjct 53117 CTCCACGGGGCGCTGGGGGTATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 53058 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || | | ||||||||| | | |||| | || | || || ||||||| Sbjct 53057 TCGTCATAGCCCTCTCACCCTCGTATACCTGGACAAGGACGCTGCTCTGGTTGTCTGAAT 52998 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 52997 AGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCT 52939 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || | || ||||| |||||||| | || | Sbjct 52938 GTCATCACTCCACCAGCTGTCTCAATGCCCAAGGACAGAGGGGTGACATCCAACAGCAGC 52879 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || || | || ||| | | || | || ||||||||||| | ||||||||| Sbjct 52878 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCG 52819 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT- 281841 || |||||||| ||||| || || | | | || || | ||| |||||||| || | Sbjct 52818 TAAGCAACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 52759 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || | || || | | ||| |||||||| | || || || || | || || || || Sbjct 52758 TGTAGCAACTTCTGG-ATCTTGGGAATACGGGTAGAGCCACCCACCAGCACGATCTCTTG 52700 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| || || || || | ||| | | | || || || || || || | Sbjct 52699 GATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTGCC 52640 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GAG-TGACATTATA 282018 | || | |||| | || || || || || | |||| ||| || || | Sbjct 52639 ACGGAAGAGATCTGCATTGAGCTCCTCAAAGCGGGCACGGGTAATGGAGGTG----TAGA 52584 Query 282019 A-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | ||||| || ||||| | || |||| ||||| ||| ||| || ||||| || | Sbjct 52583 AGTCAATACCCTCGAAGAGGGAGTCAATCTCAATGCTAGCTTGTGTGGAAGAGCTGAGGG 52524 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCA 282137 || || || | ||||| ||||| | || | | | ||| ||| ||| Sbjct 52523 TGCGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACCGCTC--GCTTGTTGCCAGC 52466 Query 282138 AATCTGTT--TTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--AGACGATTA 282193 ||| | || | || | |||||| ||||| ||| | ||| | || | ||| || Sbjct 52465 AATGTCACGCTTGTGCTTACGCTTGAATTCTTCCACAAA--ATGGTTCACCATACGGTTG 52408 Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||| || || || |||| | || | || | || | | || | || | |||| Sbjct 52407 TCAAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATTCCA 52348 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 || |||| | | | | ||||| || || || |||| ||||| || || ||| Sbjct 52347 TCCTCAATGGTAAGGATGGACACATCGAAAGTACCCCCTCCCAAGTCAAAGATGAGCACA 52288 Query 282314 TTCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 ||| | || || | || || || | ||||| || | |||||| || || Sbjct 52287 TTCTTCTCACCAGCTCGAGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCTGTG 52228 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||| ||||| | || |||||||| |||| || | || |||||||| ||||| Sbjct 52227 GGTTCATTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCC 52168 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT-CTGTTACTTCTTT 282486 || | || || || || || || ||||| || ||||| ||||||| ||| |||| Sbjct 52167 TGACGCTGGGAGTCATTGAAGTAAGCAGGCACTGTAATGACGGCATTCTGC-ACTTTGCG 52109 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 || | ||| || || | | ||||| || ||| | ||| || || | || Sbjct 52108 CCCCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTTAGGACCATAGAGCTGATCTCCTC 52049 Query 282547 TGGAGAATATTGCTTGGAT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 282605 ||| ||| | | | || || | || |||| | | || || || Sbjct 52048 TGG-GAAGAAAGTCTTCATCTCCCCCTTGTACTCCACTTGTACCTTGGGCTTGCCACTGT 51990 Query 282606 CATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 282665 |||| | || || ||||| | |||||||| || || || | |||||| | | | Sbjct 51989 CATTCACCACACGGAAGGGCCAGTGCTTCATATCGGACTGCACTGTGGGGTCATCATACT 51930 Query 282666 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGAT 282725 | || || | || || |||||||| || || ||||| || || | || | || | Sbjct 51929 TGCGGCCGATGAGACGCTTAGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCACCTGGT 51870 Query 282726 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 282785 ||||||||||| || || || | ||||| || || || | ||||| || || | Sbjct 51869 TCTTGGCTGCATCACCGATGAGGCGCTCTGTATCAGTGAAGGCCACATAGCTGGGTGTGG 51810 Query 282786 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 |||| || ||||| ||||| ||||| || || ||||| |||| || | ||||| || | Sbjct 51809 TGCGGTTCCCTTGGTCATTGGCAATGATCTCCACTTTGCCATGCTGGAAGACACCCACGC 51750 Query 282846 AA 282847 || Sbjct 51749 AA 51748 >seq84638 Length=1738 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 1437 TGTTGTAGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 1496 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 1497 TCATTATGGTGCACCAAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCTGGTCG 1556 Query 131296 TGATGG 131301 |||||| Sbjct 1557 TGATGG 1562 >seq38018 Length=25554 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 302 TGTTGTAGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 243 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 242 TCATTATGGTGCACCAAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCTGGTCG 183 Query 131296 TGATGG 131301 |||||| Sbjct 182 TGATGG 177 >seq70212 Length=15332 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | |||||||||||||| | |||| |||| | || || ||||| || |||| Sbjct 2927 CAAACACTGTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCACCGATCAACC 2868 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | || || |||||| || || ||||| ||||| || |||| Sbjct 2867 TCTCGGTGTCTGTGAAGGCCACGTAGCTTGGAGTGGTCCGGTTACCCTGATCGTTGGCAA 2808 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || |||| || ||||||| ||||| | || || || | ||| | Sbjct 2807 TGATTTCCACCTTCCCATGCTGGAATACACCAACACAGGAGTAGGTGGTGCCAAGATCGA 2748 Query 282870 TACCAATAGC 282879 | |||| ||| Sbjct 2747 TTCCAACAGC 2738 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 ||||| | |||| |||||| || || ||||||||||| | |||||| || |||||||| Sbjct 5711 TTATCCACAGCAGACACATTCAGGATGCCATTGGCATCAATATCAAAGGTTACTTCAATC 5652 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 ||||| || ||||| ||||||| ||||| || || | ||| | ||||| || Sbjct 5651 TGAGGTACACCTCTGGGAGCAGGGGGGATACCAGTCAGCTCAAACTTGCCCAGCAAGTTG 5592 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTC 281565 || |||||||| | ||||| ||||| Sbjct 5591 TTGTCTTTAGTCATGGCACGTTCTCCCTC 5563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3731647149848124