Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq176385 120 4e-22 >seq176385 Length=8277 Score = 120 bits (132), Expect = 4e-22 Identities = 536/842 (64%), Gaps = 14/842 (2%) Strand=Plus/Minus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || ||||| || || || || || || || || || || || || ||||| Sbjct 5871 ATCCAGTTTAGATCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACTCCACTGCAT 5812 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | |||||||| || |||| |||||||| || || | Sbjct 5811 GGTGGGTAGGGTGCACCTTTGGATACATCCCCTTCAAAGTACTGCCACTTGACAAATCGG 5752 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || ||||| |||| |||| || | || || || || || Sbjct 5751 GCCAGTGCATTCATGTCAGAAACATCGTATTTGT-CACTAGAAGAAACTGCACCTGGGAC 5693 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | | | |||||| | || ||||||| || || ||||| || || || || || | Sbjct 5692 TTCAGCGATTCTCTGAATGGTTGCCCACAAGTACTCATCTGGGCTGTAAGTGTCTTTTGC 5633 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455 ||| || ||||||| | | |||| | | || | ||| || | || Sbjct 5632 CCATTCAATGAACT---TAAGTATTTTGCTGCTTTCTAATACGTATTCTACAAATCTTCT 5576 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| | || | | | ||| || | | ||| Sbjct 5575 GCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGTTT 5516 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | ||| | || || ||||||| | Sbjct 5515 GTCTATGCCTGTGTTCTTTATTTTACCATCAATAACCTCATGGTGTTTTTTCCACCTTAC 5456 Query 162576 CATCTTACTGGTAGACGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAG 162635 ||| | || | | ||| || || | ||||| ||| | ||| || | Sbjct 5455 TTCTTTATTAACAGGCATTTTTTCTGTTTCCAAGCTGTTTGCACCTTTAAGGGCTTTTAA 5396 Query 162636 CTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAAC 162695 | || || || | |||||||| | |||||||| |||| ||||| || || | Sbjct 5395 TTTCTCTACAATTTCCTGGTTGGTCTTTATTGGAAAGTCCATGCCACAGAGGTTTATTAG 5336 Query 162696 ATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGAC 162755 |||||||| || || || ||| || || | | ||||| | || ||||| || Sbjct 5335 GTATTTCCAGTTTGAACTTCTTCTGTAGAGGTCTTTCATGCAGTTAATGTCTGCCTGCAC 5276 Query 162756 GCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAA 162815 | ||||| || || || || || ||||| ||| | | | | ||||| ||| || || Sbjct 5275 TCTGCTCCATGAAGCATATACAACACTCTCTAACTGACTAGAAATAAAGATATTATCAAA 5216 Query 162816 ACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTAC 162872 ||| || ||||| ||| |||| || || | || | || || ||| | || || Sbjct 5215 ACATGAGACTATTCCCCTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TGTCAAC 5159 Query 162873 GTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTC 162932 || | |||||| | |||||||||||| ||||| | ||| || | ||| || | |||||| Sbjct 5158 ATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGACCTTAGAAGTCTGTCAAGCATCTC 5099 Query 162933 TATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || || || | ||||| || || || |||| || || || || || || ||||| Sbjct 5098 AATTTTGTGATAAACCACTATTGAGTAAGCTACTGGAAATTCTGCTTCTTCATTGCTGAG 5039 Query 162993 AG 162994 || Sbjct 5038 AG 5037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577109024790400