Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq169721 129 8e-25 seq56122 129 8e-25 seq107095 91.5 2e-13 >seq169721 Length=3200 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | |||||||||||| |||||||||||||||| || | |||| Sbjct 2401 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 2460 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| ||||| |||||||| ||||| |||||||| || | Sbjct 2461 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCGAAAG 2520 Query 39759 CAAC 39762 | || Sbjct 2521 CTAC 2524 >seq56122 Length=31370 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || || || ||||| || || | ||| | Sbjct 23628 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 23569 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 23568 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 23509 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 23508 CAACCACTCTCTCACC 23493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| || ||||||||||| || ||||||||||||| ||||| |||||| ||| Sbjct 18424 TTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAACATGAGAAATAAAGTAT 18365 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||||||| | | ||| || ||||||| Sbjct 18364 TTTTCATCTGCTTTCAGCTTGTTCCAGT 18337 >seq107095 Length=1944 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | || || ||||||||||| || || || | || || || ||||| || | Sbjct 62 CACTGAACACCTTCTTGGTTTCCTTGTGCAAGTTGGACACTGCAATCCTTGCTGCCAGGA 121 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | |||||||| || || | || || || || || |||| ||||| |||||||| | Sbjct 122 TGGCATAGTCGGGGTGCTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAACGTATCCA 181 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | ||||| || || | || ||||| ||||| |||||||||| Sbjct 182 GTTCCACTGTTGTGACACCACTGTAGAGCCCCTGAATCACTTTCATGG 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685337719365360