Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq77566 109 4e-19 seq26289 109 4e-19 seq42193 95.1 1e-14 seq56122 91.5 1e-13 >seq77566 Length=1787 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 1521 CAAGAAGTGCAAGTCACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 1462 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 1461 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 1414 >seq26289 Length=38760 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 120 CAAGAAGTGCAAGTCACAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 61 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 60 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 13 >seq42193 Length=10335 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| |||||||| ||| Sbjct 4270 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTTGATGGTGAATTGT 4329 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 |||| || | ||||| || || || || ||||||||||| || || || || || || | Sbjct 4330 CATGCCAGCTATATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 4389 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||| || ||||||||||| || || || Sbjct 4390 GCTATTCATTGCTTACTTATATGATTGCCCATGTCAC 4426 >seq56122 Length=31370 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| |||||||||||||| ||||||| |||||||| || ||||| | Sbjct 28040 AAAATCCTTTTGATTTCATGGAAAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 28099 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||||||||| || | | || ||| ||||| |||||| || | Sbjct 28100 AGCGGGTTTCAGAATATCAACGTTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 28159 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 28160 CTCTGGATGCAGATTT 28175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396569674858870