Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq116889 188 8e-43 seq144538 145 9e-30 seq45594 140 4e-28 seq27467 86.0 7e-12 >seq116889 Length=707 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 409 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 468 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| ||||| |||||||| || || |||||||| |||||| Sbjct 469 GACACCATTGAGAATGTGAAGGCAAAAATCCAGGACAAAGAAGGCATTCCTCCTGACCAG 528 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || || | || ||||| | |||||||| Sbjct 529 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTATAAC 588 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||||||||| || ||||| || ||||||| | ||||| Sbjct 589 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGAGGTGG 635 >seq144538 Length=901 Score = 145 bits (160), Expect = 9e-30 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | | Sbjct 195 ATGCAGATCTTCGTGAAGACACTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 136 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || |||||| Sbjct 135 GACACCATTGAGAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCACCCGACCAG 76 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 75 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAAC 16 Query 27586 GTCCAAAAGGAATCC 27600 |||| ||||||||| Sbjct 15 ATCCAGAAGGAATCC 1 >seq45594 Length=40842 Score = 140 bits (154), Expect = 4e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27451 GAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 ||||||||| | |||| | ||||| ||| ||||||| || || ||||||||||| || Sbjct 40842 GAGGTTGAGCCCAGTGACACCATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGC 40783 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||| ||||||||| | || || || ||||| ||||| || || |||| || ||| Sbjct 40782 ATTCCTCCTGACCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACC 40723 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || |||| ||||||||||| || ||||| || |||| || | ||| Sbjct 40722 CTGTCTGACTACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGT 40663 Query 27631 GG 27632 || Sbjct 40662 GG 40661 >seq27467 Length=3426 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC--GACTCCA 80632 ||||| ||| || | || || || || |||| | |||||| |||||||| | || | Sbjct 2355 GGAGAACCCTCGTATGTTTCATAGGGTCCCTGCTCCTTGGCAAGCTCACAGCTGGCTTCC 2296 Query 80633 TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGG 80691 ||| ||| | ||| ||| ||| |||| || ||||| | ||| | |||| || Sbjct 2295 AAAGCACCG--TAATAGATGGTCTCGAAGATCTGCTGGTTCA-AGCGCTGGGCCTCGGGA 2239 Query 80692 TCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCG 80751 || || | || | ||||| ||||| | || ||||||||||| || |||||| || Sbjct 2238 CTCTCAAAGGGGAACCTCATCAGGATGAAGGCATCTGCCAGGCCCTGCACCCCGATGCCG 2179 Query 80752 ATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCT 80785 || || ||||||||| |||| || ||||| |||| Sbjct 2178 ATGGGACGGTGGCGCCTGTTGGAGCGCTCCGCCT 2145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569006000310880