Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq116889 129 1e-24 seq45594 127 5e-24 seq144538 123 6e-23 seq37566 107 5e-18 >seq116889 Length=707 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| |||||||| || |||| || || || | || || | || || Sbjct 621 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCAGACAGGGTGCGTCCGTC 562 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || ||||| || ||||| ||||| ||||| Sbjct 561 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC 502 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| ||||||| || |||||||| || || || || | ||||| || Sbjct 501 CTGGATTTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGT 442 Query 225681 CTTGCCCGTCA 225691 |||||| |||| Sbjct 441 CTTGCCAGTCA 431 >seq45594 Length=40842 Score = 127 bits (140), Expect = 5e-24 Identities = 120/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| ||||| |||||||| || |||| ||||| || | || || | ||||| Sbjct 40675 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATC 40734 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||||||||| || | || ||||| || ||||| ||||||||||| Sbjct 40735 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 40794 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| |||||| ||| |||||||| Sbjct 40795 CTGGATCTTGGCCTTCACGTTTTCAATGGTGTC 40827 >seq144538 Length=901 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225519 GGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGC 225578 |||||| || |||| ||||| || | || || | |||||||| |||||||| ||||| Sbjct 1 GGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGC 60 Query 225579 GAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCAC 225638 ||||| || | || |||||||| ||||| ||||||||||| |||||||| |||||| Sbjct 61 AAAGATCAGCCTCTGCTGGTCGGGTGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCAC 120 Query 225639 AGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||| || ||||| || | ||||| |||||||| || | || || Sbjct 121 GTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGTGTCTT 180 Query 225699 TATGAACACTTGCATTTT 225716 | ||| | ||||| || Sbjct 181 CACGAAGATCTGCATGTT 198 >seq37566 Length=11242 Score = 107 bits (118), Expect = 5e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | |||||||| ||| | ||||| ||||||||||| || |||||||| | || || Sbjct 1291 CCAAATCTACAACGTAATTGTCACGGCTCATGCCTTTGTAATAATTTTCTTCATGGTAAT 1232 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || || || |||||||| ||||| ||||| | || || || || || || Sbjct 1231 ACCAATCATAATTGGAGGATTCGGAAACTGATTAGTTCCCCTCATAATCGGCGCCCCCGA 1172 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 || || || ||| | | || || ||||| || ||| |||| || || ||||| Sbjct 1171 CATAGCATTCCCACGCATAAATAACATAAGCTTCTGACTACTTCCCCCATCCTT 1118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189735484263956