Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amazona_20vittata_20[genbank_20GCA_5F000332375.1_202013-01-22] 182,974 sequences; 1,175,404,042 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq45708 149 9e-31 seq1786 127 3e-24 >seq45708 Length=22708 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| ||||| || || |||||||| Sbjct 16773 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 16714 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || | |||||||||||| ||||| || || | ||||||||| | || || Sbjct 16713 ATGTCACAGACTCGGTTGTGTTCCCTCAGCCATATTGTAGAGTACATCATCAAGCCTGGG 16654 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || | | ||||| Sbjct 16653 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 16594 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 16593 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 16534 Query 9484 TG 9485 || Sbjct 16533 TG 16532 Score = 145 bits (160), Expect = 1e-29 Identities = 221/314 (70%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | ||| Sbjct 18872 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 18813 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || || || | ||| || |||||||| |||||||||||| | |||| Sbjct 18812 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 18753 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || ||||||| ||||| || ||||| || || || | ||| | || Sbjct 18752 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 18693 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | |||||||||||||| || || |||| || || | || || | ||||||||||| Sbjct 18692 TTTCACCGAAGATGGCACCTGGTCGTGGCTGCTCTACAAGGAGGCCTGGGTACAGCTCCA 18633 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-- 8586 ||| || | |||||| ||||| | | ||| || || || || ||||| ||||| Sbjct 18632 TAGCATCAATGTCTCCATAAAGCTCTTCCAATTCAGCTGCCATTTCTTTTTCCCCTGTAA 18573 Query 8587 TTTATTAATAAAAA 8600 || |||| |||||| Sbjct 18572 TTGATTAGTAAAAA 18559 >seq1786 Length=47433 Score = 127 bits (140), Expect = 3e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| |||| ||||||||| || |||||||| ||||| ||||| Sbjct 7264 TCACCAATGAGGATGAGACGAGCGGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 7205 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| || || || || | |||||| || | ||||||| ||||||||||| Sbjct 7204 TCCCGTTTCAGTACGTCACAGACACGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 7145 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || | ||| || || |||| || || | ||||| || | | | ||| Sbjct 7144 CACAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCTATCGCCAGCTGCTTCTCCTTGGGG 7085 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466 | | || || |||| |||||| ||| || | || |||||| ||||||||||| Sbjct 7084 ATGGCAGGCGGGTAGACCATGTGAACCGGGGCATCGGTGACCGGGGGGGGATACA 7030 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 ||||||| ||||| ||||| ||||||||| | |||||||||||| ||| | | || | Sbjct 10353 CTCCGCCAAAGGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 10294 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| |||||||| || | ||| | ||||| || || ||||| ||||||| Sbjct 10293 CCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGCTTTCCCCAAAGATTCCGTTGGGTT 10234 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGG 8552 |||| || || | || || || | || | ||||| || || | |||||| || || Sbjct 10233 GGGGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCAGCGCGTCAATGTCTCCATAGAGCT 10174 Query 8553 CCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | ||||| || || |||| | ||||||| Sbjct 10173 CTTGCAGTTCTGCTGCTTTCTCTTCCTCTCCTG 10141 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || ||||| || |||||| |||| |||||| | | || || ||| | ||| | | Sbjct 6521 CTCACCCCGTGCCCCAGTGCTTTGGTGAAGCCGCGTCCCATCTTCCCAGAC--GTCTTGA 6464 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| |||||||| ||| | || ||||||||||| | ||||||||||||||||| Sbjct 6463 AGAACTGGTGGGTGAAATGCTGGGCGAAGAAGGCAAACATCAGGTTGGTGCCCTGGGGAT 6404 Query 9768 CGGGAGTGAAGGTCCTCCGAAGAAG 9792 | | ||| ||||||| || || Sbjct 6403 CAGCTTCGAACTTCCTCCGCAGCAG 6379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715237177304960