Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq828 149 8e-31 >seq828 Length=188102 Score = 149 bits (164), Expect = 8e-31 Identities = 201/278 (72%), Gaps = 4/278 (1%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | | | | | |||||||||||||||||||| | ||||||||||| Sbjct 78039 GGGCACGCCGTCGGGAGCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCG 77980 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| || |||||| ||| ||| |||| | ||| |||| ||||||| || Sbjct 77979 CACGGGTGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGAGGGGTCGTCGTGCGG 77920 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||||||||| ||||||| ||||||||| || || |||| | |||| ||| Sbjct 77919 GAAGGGCAGGGCCTCCTTCAGGAAGGTGAAGAGCGGGTGGGCGTCCTTCC--CGTTCACC 77862 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||| ||||| |||| | | ||||| ||||| || ||||||| | Sbjct 77861 TCGCACTTCTCGAAGACGGGGAAGTTGGGCTTGTACCCGTTGCCAGGCCGCACGTGCTCC 77802 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || || ||| |||||| | || ||| || ||||| Sbjct 77801 AGCGAGCGCAGGATCTCCTCGTTGGTGGCATTCTCCTG 77764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608199509459520