Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq459 152 5e-32 seq1065 150 2e-31 seq104 89.7 5e-13 seq315 82.4 8e-11 >seq459 Length=1799516 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 774044 ATGCAGATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCCAGT 774103 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||| ||| | |||||| Sbjct 774104 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 774163 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| ||||| || || | ||||||||| |||||||||| Sbjct 774164 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAAC 774223 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| |||| || ||||| ||| ||||| | |||||||| Sbjct 774224 ATCCAGAAGGAATCCACTCTCCATCTCGTGCTGCGCCTCAGGGGCGG 774270 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || ||||| ||||||||| | || ||||| ||| Sbjct 774271 AATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTCGAGCCCAG 774330 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||| || ||||| ||| | ||||| Sbjct 774331 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 774390 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| ||||| || || | ||||||||| ||||||||| Sbjct 774391 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAA 774450 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||| || ||| | || |||||||| ||| ||||| ||||||| || Sbjct 774451 CATCCAAAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGG 774498 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || | || || || ||||||||| | || || || ||| Sbjct 773815 AATGCAGATCTTTGTCAAGACCTTGACAGGTAAGACCATCACCTTGGAAGTTGAGCCCAG 773874 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||| |||||||| || | ||||| Sbjct 773875 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCA 773934 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| ||||| ||||| || || | ||||||||| ||||||||| Sbjct 773935 GCAGAGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAA 773994 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| | ||| ||||| | ||||||||| Sbjct 773995 CATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTCAGGGGCGGC 774043 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| || | |||||||| | || || | ||| ||||| ||||| || Sbjct 773681 GACAAGGAGGGCATTCCTCCCGACCAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTTGAA 773740 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| ||||||||||||||||||||| |||| || ||||| ||| || Sbjct 773741 GATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTCCATCTCGTGCTG 773800 Query 40903 CGCTTGAGGGGCGG 40916 ||| | |||||||| Sbjct 773801 CGCCTCAGGGGCGG 773814 >seq1065 Length=1128224 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| |||| || || ||| Sbjct 373612 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 373553 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | |||||||||||||| || | |||||| Sbjct 373552 GACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 373493 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 373492 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAAC 373433 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || ||| ||||| ||||||| ||| Sbjct 373432 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGC 373385 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| |||| || || ||| Sbjct 373840 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 373781 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | |||||||||||||| || | |||||| Sbjct 373780 GACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 373721 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 373720 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAAC 373661 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || || || || ||| |||||||||| || ||| Sbjct 373660 ATCCAGAAAGAGTCTACTCTTCACCTTGTGCTGCGCTTGAGAGGTGGC 373613 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| || || ||||| ||||||||| |||| || || ||| Sbjct 374068 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 374009 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| ||||| | |||||||||||||| || | |||||| Sbjct 374008 GACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 373949 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 373948 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAAC 373889 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| |||| || || || || ||||| |||| || ||| Sbjct 373888 ATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGAGGTGGC 373841 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| |||||||| |||| || || || Sbjct 374299 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCC 374240 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | | |||| || || | ||||| || ||||| ||| | ||| Sbjct 374239 AGTGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 374180 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| ||||| || |||| ||||||||| |||||| Sbjct 374179 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCTGACTAC 374120 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||| |||| || || || || ||||| |||| || ||| Sbjct 374119 AACATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGAGGTGGC 374069 >seq104 Length=2005322 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | | |||||||| || || || || |||||||| || ||||||||| Sbjct 1836413 GAGCCTCTCCTCAGAAAAAACCCCCGTCGCTTTGTCATCTTCCCCATCCAGTACCCGGAC 1836472 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| ||||||||| ||||| |||| || || ||||| | ||||||||| Sbjct 1836473 ATATGGAAAATGTACAAACAGGCCCAGGCCTCCTTTTGGACGGCGGAGGAGGTG 1836526 >seq315 Length=1270250 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/123 (77%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACA-CGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCA 116742 |||| ||||| || ||||||| | ||| |||||||| |||| ||| | | ||| | Sbjct 387673 AGGTCGACCTCTCAAAGGACATCCAGC-ACTGGGAGTCGCT-GAAGCCCGAGGAGAAATA 387730 Query 116743 TTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 |||||| |||||| || ||||| || || ||||| |||||||| ||||||||||| || Sbjct 387731 CTTCATCTCGCACGTCCTCGCCTTCTTTGCTGCCAGTGACGGCATTGTCAACGAGAACCT 387790 Query 116803 GGT 116805 ||| Sbjct 387791 GGT 387793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514713718442880