Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq37 96.9 2e-15 >seq37 Length=3134438 Score = 96.9 bits (106), Expect = 2e-15 Identities = 130/180 (72%), Gaps = 1/180 (1%) Strand=Plus/Plus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||||||||| | || | || |||||||| ||||| || |||||||| ||| Sbjct 1774313 GTGACATGGGCGATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGCACTCCT 1774372 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | || || || | | |||| ||||| Sbjct 1774373 AGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGAACATAG 1774432 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296 ||||| | | ||||||| || ||||| ||||| | || ||||| || ||| ||| Sbjct 1774433 AACTGGCAAAGAGCATGACAAGGTGGCAAAGCCATCAGAGAAATATCTAGGA-ATTGCAA 1774491 Score = 96.9 bits (106), Expect = 2e-15 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||||||| ||||| |||||||| ||||| | || || |||||| Sbjct 1777708 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCTTCT 1777767 Query 97462 CTATCACAGAAACCAAGCTTATCTA--AATAGGACCTAGATCCATTTGCATCCCAAATGT 97519 || | ||||| ||||||| | ||| || | |||||||| ||||||||||| | Sbjct 1777768 CTGGTGCCAAAACCCTGCTTATCCAGGAAT-TCACGT-GATCCATTGGCATCCCAAATCT 1777825 Query 97520 GCACACCAGATGCTGCAAGCTCTTTG 97545 |||||| ||| | ||||| ||| Sbjct 1777826 TCACACCCTTTGCAGAGAGCTCCTTG 1777851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346452275962160