Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1925 291 6e-74 seq537 96.9 2e-15 >seq1925 Length=2542117 Score = 291 bits (322), Expect = 6e-74 Identities = 635/938 (68%), Gaps = 26/938 (3%) Strand=Plus/Minus Query 107523 ATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGAC 107582 |||||||| || ||| | | ||||||||| | || | ||||| ||||| | Sbjct 2311681 ATCAACTGCTCGGGGGTTGTCAGCGGGGACCAGCAGGCGATCCAGCAGGCGCTCCTCAGC 2311622 Query 107583 AACCTGGAAGT--GAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAA 107640 |||||||| | ||| ||||| | | |||| ||| | | | ||||| ||||| | Sbjct 2311621 AACCTGGAGCTTAGAAACAAAAGGGAACCCCTCACACCCGAAGCA--TACCTGAACATGA 2311564 Query 107641 CCAGAGACTGTGAGC-GCTTCAAGG---CCCAAAGGAAGTTCATACAGTTCCCACTGAGT 107696 | || ||||| ||| ||||||||| ||| || ||| | ||||||| |||||| Sbjct 2311563 CAAGGGACTGC-AGCAGCTTCAAGGAGACCC---GGCGCTTCCTGGAGTTCCCGCTGAGT 2311508 Query 107697 AAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAAC 107756 | || ||| | ||||||||||||||||| || || |||| | || || || | Sbjct 2311507 GAGGAGGAGGCCGCGTTCCCCATTGCCTACTCCATAGTCATCCACAACAAAATCGAGATG 2311448 Query 107757 TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGAT 107816 || || ||||| ||||| || | || || || || ||| | ||||| ||||||| || Sbjct 2311447 TTCGAGCGGCTCCTGCGGTCCATCTACGCGCCACAAAACGTCTACTGCATCCACGTAGAC 2311388 Query 107817 GTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAAT 107876 |||||||||| | ||| | ||||| || | |||||| ||||||||||||| Sbjct 2311387 AGCAAGTCCCCAGCCGCCTTCCAGGAGGCCGTGAGGGCCATCGCCGCCTGCTTCCCCAAC 2311328 Query 107877 GTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCT 107936 ||||| ||||||| ||| |||||| |||||||||||||| | |||| ||| Sbjct 2311327 GTCTTTGTGGCCAGCCGCCTGGAGAGGGTGGTCTATGCCTCCTGGTCACGCCTGCAGGCT 2311268 Query 107937 GACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAAT 107996 ||||| ||||| ||| | ||| |||| |||||| | ||||| ||| || | || || Sbjct 2311267 GACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCGTGGCGCTATGTCCTCAAC 2311208 Query 107997 ACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATG 108056 || ||||| || ||||||||||| || ||||| || |||||||| | |||||| || || Sbjct 2311207 ACCTGCGGCACCGACTTCCCCATCAAAACCAACGCGGAGATGGTTCGCGCCCTCCAGCTG 2311148 Query 108057 TTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa---TCGC 108113 || |||| ||||||| |||||||| ||| || || |||| | || | ||| Sbjct 2311147 CTGCAGGGGCAGAACAGCATGGAGTCCGAGAAGCCATC---GTCCTACAAGCAGCTGCGC 2311091 Query 108114 TGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAA--GATGAAGGACC 108171 ||||| |||| | | || ||| || | | | | | |||| | || |||| | | Sbjct 2311090 TGGAAGTACCACCACGAAGTGGGGGAGGCCATCT-CGCAGACAGCCACCGA-GAAGCAGC 2311033 Query 108172 CTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCT 108231 | | || | | ||||||||||| || | || || | | || | || |||| Sbjct 2311032 CATCGCCACTCAGCTCGCCCATGTTCACGGGCAGCGCGTACGTGGCGGTGACGCGGGCCT 2310973 Query 108232 TTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACA 108291 | || || || |||| || |||| | | | | || |||| ||| |||| Sbjct 2310972 TCGTGCAGCACATCTTCGAGGACCCCGCGGCGCTGCAGTTCCTCGAGTGGGCCAAGGACA 2310913 Query 108292 CCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTC--CGTGGATGCCT 108347 |||| ||||| ||||| ||| ||||||||||||| | |||||| | |||| ||| Sbjct 2310912 CCTACAGCCCTGACGAGCACGTCTGGGCCACCCTCACCCGCGTGCCCGGCGTGCGTGCAG 2310853 Query 108348 GGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTC 108407 || | | || | || ||||| | |||| ||||||| ||| | || | || Sbjct 2310852 GGGGCCCTGCCCCACAACGACAAGTTCGAGCTCTCGGACATGAACGCCCTGCCCCGCCTG 2310793 Query 108408 GTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGG 108445 |||||||||||||||| ||||| || ||||| ||| Sbjct 2310792 GTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGG 2310755 >seq537 Length=958612 Score = 96.9 bits (106), Expect = 2e-15 Identities = 224/331 (68%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 108231 TTTGTCCAACATGTCTTAGACAACC-CTAAATCCCAAAGACTGGTTGAATGGGTCAAAGA 108289 ||||| ||||| | ||||| | | | |||||| || | | |||| |||| ||||| Sbjct 105911 TTTGTAGAACATATATTAGAAAGCAGCAAAATCCTCAA-ATTTATTGAGTGGGCAAAAGA 105853 Query 108290 CACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCCTG 108348 || || ||||| || ||| |||| ||||| || ||||| | ||| || | | || | Sbjct 105852 TACTTACAGCCCTGATGAATACCTGTGGGCAACGATTCAGAGAA-TCCCTGAAGTCCCCG 105794 Query 108349 GCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 108405 | ||||| || || || ||||| | | || || |||| ||| | |||||| Sbjct 105793 GTGCTGTTTCTTCTAGTGAC---AAGTACGATGTTTCCGATATGAATGCACTGGCCAGGT 105737 Query 108406 TCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCT 108465 | ||||||||||||||| || |||||||| | || || ||||| |||| ||| Sbjct 105736 TTGTCAAGTGGCAGTACTTTGAAGGAGATGTGTCTAAAGGTGCACCTTACCCACCATGCA 105677 Query 108466 CTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCC 108525 ||| | ||| || | |||| | | ||||| || || ||| | ||||| || | Sbjct 105676 GCGGAGTTCATGTTCGGTCTGTCTGTGTGTTCGGGGTAGGAGATCTGAAATGGATGCTGC 105617 Query 108526 AGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||| ||| |||| || || |||||||| Sbjct 105616 GAAACCACCACTTCTTTGCTAATAAGTTTGA 105586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347935655643312