Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq315 95.1 1e-14 seq104 87.8 2e-12 >seq315 Length=1270250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/109 (80%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 14464 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14523 ||| ||||| |||| || ||||| || | |||||||||||| || |||||||||||||| Sbjct 388400 AGTCCTTGA--TGTACGTGTCAATCAGAAGGCTATACATTTCTGAATGTATGTTTTCCAT 388343 Query 14524 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCT 14572 || ||||| || ||||| ||||| | |||||||| |||||| ||| Sbjct 388342 GGCGATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 388294 >seq104 Length=2005322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||| ||||| || || || || | ||| ||||||| || | || | Sbjct 1841354 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1841295 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | |||||| || ||||| || || || || ||||| || || || ||||||||||| | Sbjct 1841294 TCAGCCAAAAGATAGCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 1841235 Query 14346 C 14346 | Sbjct 1841234 C 1841234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481872370731840