Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq459 107 1e-18 >seq459 Length=1799516 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||| |||||||| ||||||||||||| || || | |||||| | || Sbjct 774474 TGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTGC 774415 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||||||||| || || | Sbjct 774414 TTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTG 774355 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||||| ||||||| || | ||||||| | ||||| ||| Sbjct 774354 GCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGTC 774295 Query 18303 AATGTTTTTACAAAAATTTGCATT 18326 || || || ||||| || |||||| Sbjct 774294 AAGGTCTTGACAAAGATCTGCATT 774271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||||| || || | |||||| | || Sbjct 774246 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTGC 774187 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||| ||||| || || | Sbjct 774186 TTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTG 774127 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||||| |||||| ||| | ||||||| | ||||| ||| Sbjct 774126 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTC 774067 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || || ||||| ||||| Sbjct 774066 AGGGTCTTCACGAAAATCTGCAT 774044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378981129961560