Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq459 102 7e-17 seq1065 91.5 1e-13 >seq459 Length=1799516 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||||||||| || |||||| | || || || || Sbjct 774272 ATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTCGAGCCCAGT 774331 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||||| | || || |||||| Sbjct 774332 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 774391 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| | ||||| || || ||| || ||| Sbjct 774392 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAAC 774451 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || |||||||| || || || ||||| || || | |||||||| |||| Sbjct 774452 ATCCAAAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGGTA 774500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||| || || |||||| | || ||||| || Sbjct 773816 ATGCAGATCTTTGTCAAGACCTTGACAGGTAAGACCATCACCTTGGAAGTTGAGCCCAGT 773875 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| ||| | || ||||||||| Sbjct 773876 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAG 773935 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| | ||||| || || ||| || ||| Sbjct 773936 CAGAGGCTGATTTTCGCTGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGACTACAAC 773995 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || ||||| || |||| || | || |||||||| Sbjct 773996 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTCAGGGGCGG 774042 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| ||| | || |||||||||||| | || || ||||||||||| ||| | || Sbjct 773680 GGACAAGGAGGGCATTCCTCCCGACCAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTTGA 773739 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || ||| || ||||| || || ||||| ||||| ||||| || || Sbjct 773740 AGATGGGCGCACCCTGTCCGACTACAACATCCAGAAGGAATCCACTCTCCATCTCGTGCT 773799 Query 31405 TAGACTGAGGGGCGG 31419 | || |||||||| Sbjct 773800 GCGCCTCAGGGGCGG 773814 >seq1065 Length=1128224 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || ||||| ||||| || |||||| |||| ||||| || Sbjct 373841 CATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 373782 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || | ||| |||||| || ||| | || || ||||| Sbjct 373781 TGACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCA 373722 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| |||| || | || || || || || Sbjct 373721 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAA 373662 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| || |||||||| || || || Sbjct 373661 CATCCAGAAAGAGTCTACTCTTCACCTTGTGCT 373629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || ||||| ||||| || |||||| |||| ||||| || Sbjct 374069 CATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 374010 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || | ||| |||||| || ||| | || || ||||| Sbjct 374009 TGACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCA 373950 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| |||| || | || || || || || Sbjct 373949 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAA 373890 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| ||||| || || || || | ||||| || || Sbjct 373889 CATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGAGGTGG 373842 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || ||||| |||| ||||| || Sbjct 374299 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGCCC 374240 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || | |||| | || || | || ||||||||||||| | || || ||| Sbjct 374239 AGTGATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 374180 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || || ||||| ||| | |||||| || || || || Sbjct 374179 CAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCTGACTAC 374120 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || ||||| ||||| || || || || | ||||| || || Sbjct 374119 AACATCCAGAAGGAATCCACTCTCCACCTTGTCCTGCGCCTGAGAGGTGG 374070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || || || ||||| ||||| || |||||| |||| ||||| || Sbjct 373613 CATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 373554 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || || | ||| |||||| || ||| | || || ||||| Sbjct 373553 TGACACTATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAGGGCATTCCTCCTGACCA 373494 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| |||| || | || || || || || Sbjct 373493 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGACTACAA 373434 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || || || || | |||||||| || Sbjct 373433 CATCCAGAAGGAGTCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGG 373386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445329058584960