Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq315 102 1e-16 seq998 98.7 1e-15 seq1661 93.3 6e-14 >seq315 Length=1270250 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| ||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 390555 CCTCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCT 390496 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 390495 TCAGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAG 390436 Query 36300 C 36300 | Sbjct 390435 C 390435 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || || ||||||| ||| ||||||||||| ||||| |||||||| ||||| || || || Sbjct 388389 TACGTGTCAATCAGAAGGCTATACATTTCTGAATGTATGTTTTCCATGGCGATCTGGAAG 388330 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || |||||||| | ||| || || || ||||||||| Sbjct 388329 CCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 388294 >seq998 Length=117795 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 ||||| || || ||||||| || ||| || || ||||| || || || || ||||||||| Sbjct 96752 TATGTTTCATACGGTCCTTGCTCCTCGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTAA 96811 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 |||||||| || || |||| || || | || || ||| | || ||||| || || Sbjct 96812 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 96871 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | ||||| || || ||||| || || || |||||||| || || || | ||| | Sbjct 96872 CTCATCAGAATGAAAGCATCTGCCAAACCCTGCACACCAATGCCAATGGGACGATGGCGT 96931 Query 65601 TTATTAGAGATTTCAGC 65617 | || ||| |||||| Sbjct 96932 CTGTTGGAGCGTTCAGC 96948 >seq1661 Length=1198965 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||| | ||| ||||| |||||||| || || | |||||||||||||| ||||| Sbjct 1052667 CCCGCTCCGAATTTGCTGAAGTCTCTCTTCGACTGCAAGGTATATGCAGTCAGTCCAAGA 1052608 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || |||||||| || || || ||||||| |||| |||||| |||||| Sbjct 1052607 AATACAGCAGTAGTGAGAATAAAGGCTTGCAAGACGATGGACACATCGTAGAAA 1052554 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| |||||| || | |||| | | | ||| || | ||||||||||||||| || Sbjct 1054004 TTATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAGGAACAGATTGATGATGTC 1053945 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||||| | || | | || ||||| || || | || || || || | Sbjct 1053944 CAAGTAGAGATTGATCGCAGCCAGTATGTACTCTTCGGGGGATAATTTGTGCATCAGCAA 1053885 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||| || || || ||||| ||||| | ||| || || ||||| | |||| Sbjct 1053884 ATGAGTGTCGTAAATTATAAATCCACAGAAGAGAAGTGCTCCGGCAGCAGCAAACACCAA 1053825 Query 9407 CTCCACTGTTTCACT 9421 ||| | || ||||| Sbjct 1053824 CTCTATCGTCTCACT 1053810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657527066665920