Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq459 107 2e-18 seq1065 105 7e-18 seq998 93.3 4e-14 >seq459 Length=1799516 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||| ||||| || ||| || |||| | ||||| ||||| || ||| Sbjct 774468 GTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCA 774409 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | ||||| || || || |||||||| ||||| ||| || || Sbjct 774408 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 774349 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||| | ||| | |||||||| ||||| || Sbjct 774348 ACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTC 774289 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 774288 TTGACAAAGATCTGCAT 774272 >seq1065 Length=1128224 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| || |||| || | ||||| ||||||||||| || ||||| || || Sbjct 373613 GCCACCTCTCAAGCGCAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 373672 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| || || ||||| || ||||| |||||| | ||||| || ||||| Sbjct 373673 CAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGG 373732 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| |||||| || | | || | ||||| ||||||| || Sbjct 373733 AATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAAC 373792 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| |||| ||||| || || || ||||| Sbjct 373793 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 373840 >seq998 Length=117795 Score = 93.3 bits (102), Expect = 4e-14 Identities = 85/105 (81%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 153684 ACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACT-TTGATTGCTTTT 153742 |||||||| | ||||| |||||||||||| || | || ||| | || |||||||| || Sbjct 99131 ACTATTTCTGTACACAGATTGCTGCATTTGAT-GGTCCCCAAATTCTGCTGATTGCTCTT 99189 Query 153743 GCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTC 153787 ||||| |||| ||||||||| |||||||| |||||||| || || Sbjct 99190 CCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGTGCCAGTCTC 99234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495577311609600