Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq104 123 4e-23 seq315 111 2e-19 seq998 98.7 1e-15 seq77207 93.3 6e-14 >seq104 Length=2005322 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 1841354 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1841295 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || | ||||| || || || |||||||| ||||| ||||| ||||||| Sbjct 1841294 TCAGCCAAAAGATAGCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 1841235 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 1841234 CAACGACTCTCTCACC 1841219 >seq315 Length=1270250 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||| ||| || |||||||| ||||| |||||||| ||||||| || | || | Sbjct 390555 CCTCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCT 390496 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || |||||||||||||| ||||| || || ||||| | Sbjct 390495 TCAGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAG 390436 Query 50102 CAAC 50105 | || Sbjct 390435 CTAC 390432 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || || |||| ||| ||||||||||| ||||| |||||||| ||||| ||||| || Sbjct 388389 TACGTGTCAATCAGAAGGCTATACATTTCTGAATGTATGTTTTCCATGGCGATCTGGAAG 388330 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || |||||||| | ||| || || || || |||||| Sbjct 388329 CCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 388294 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | ||||||||||| || || || ||||| || || || || ||| Sbjct 391886 GACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCGAAGAAGTTGGTCTTGCCT 391827 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 |||| || || ||||||||||||||||| || || Sbjct 391826 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGGTT 391792 >seq998 Length=117795 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 |||||||||||| ||||||| || ||||| | ||||| || || || || || ||||| Sbjct 96751 GTATGTTTCATACGGTCCTTGCTCCTCGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTA 96810 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 ||||||||| || ||||||| || || | || || || | || ||||| || || Sbjct 96811 ATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTA 96870 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | ||||| || || ||||| || || || |||||||| || || || | ||| Sbjct 96871 TCTCATCAGAATGAAAGCATCTGCCAAACCCTGCACACCAATGCCAATGGGACGATG 96927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| ||||| ||||| || | ||||| || ||||| || |||||||| || || || | Sbjct 95238 TACCTGAAACTCTCCTGAAAGGACTCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCAAT 95297 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGG 79166 ||||||||||| ||||| || |||||||| || || |||||||| || Sbjct 95298 GGATTCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 95345 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 |||| ||||| ||||||||||||||||| || || | || || ||||||| | ||| Sbjct 100424 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 100483 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || || || || ||||| |||||| || || ||| | | || || |||||| || Sbjct 100484 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGATGCCAAGG 100542 Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | |||| |||| Sbjct 100543 CTCCAGGTAGATGGCAAAAGCTCCAGGTC 100571 >seq77207 Length=1232 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||||||||| || || || ||| || | || ||||| || || || | Sbjct 38 TCCACCCATAGAAATGCATGCTGGTCAGCTTGCCGTAGTTGGGTTCTGCAATGTGAATGT 97 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || || ||||| ||||| ||||| |||||||| ||||| || | ||| || | Sbjct 98 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 157 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 158 TCTGGGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717564106480320