Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq315 89.7 5e-13 seq104 87.8 2e-12 >seq315 Length=1270250 Score = 89.7 bits (98), Expect = 5e-13 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 13920 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTAT 13979 ||| ||||| |||| || ||||| || | |||||||||||| || ||||||||||| || Sbjct 388400 AGTCCTTGA--TGTACGTGTCAATCAGAAGGCTATACATTTCTGAATGTATGTTTTCCAT 388343 Query 13980 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 || ||||| || ||||| ||||| | |||||||| |||||| || Sbjct 388342 GGCGATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 388295 >seq104 Length=2005322 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||| ||||| || || || || | ||| ||||||| || | || | Sbjct 1841354 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 1841295 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | |||||| || ||||| || || || || ||||| || || || ||||||||||| | Sbjct 1841294 TCAGCCAAAAGATAGCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 1841235 Query 13802 C 13802 | Sbjct 1841234 C 1841234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478119256528320