Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq315 111 2e-19 seq998 86.0 8e-12 >seq315 Length=1270250 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||| ||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 390555 CCTCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCT 390496 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||||| || || ||||| || |||||||||||||| ||||| || || ||||| | Sbjct 390495 TCAGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAG 390436 Query 42207 C 42207 | Sbjct 390435 C 390435 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | ||||||||||| || || || ||||| || || ||||| ||| Sbjct 391886 GACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCGAAGAAGTTGGTCTTGCCT 391827 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 |||| || || ||||||||||||||||| || || Sbjct 391826 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGGTT 391792 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || || |||| ||| ||||||||||||||||| |||||||| ||||| ||||| || Sbjct 388389 TACGTGTCAATCAGAAGGCTATACATTTCTGAATGTATGTTTTCCATGGCGATCTGGAAG 388330 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || |||||||| | || || || | ||||||||| Sbjct 388329 CCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 388294 >seq998 Length=117795 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442 ||||| || || ||||||| | ||||| || ||||| || || || || || || ||| Sbjct 96752 TATGTTTCATACGGTCCTTGCTCCTCGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTAA 96811 Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502 |||||||| || ||||||| || || | || || ||||| || ||||| || || Sbjct 96812 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 96871 Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 | | ||||| || || ||||| || || || || ||||| || || || Sbjct 96872 CTCATCAGAATGAAAGCATCTGCCAAACCCTGCACACCAATGCCAATGGG 96921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670480745330880