Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1354 172 1e-37 seq315 113 1e-19 seq104 113 1e-19 >seq1354 Length=560939 Score = 172 bits (190), Expect = 1e-37 Identities = 136/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| |||||| | ||||| | ||||||||| Sbjct 35275 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACTTGGATACAGTATTCTTCATC 35216 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 35215 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 35156 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 35155 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 35113 >seq315 Length=1270250 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| |||||||| ||||| ||||| || |||||||| || |||||||| Sbjct 390420 GGAGAACGTGTAGTAGCTTTTGCAGCTGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCT 390479 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| ||||||||||||| | ||||| ||| | ||||| ||||||||| | Sbjct 390480 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCGGGACTCACTTTTTCTAACGAACTC 390539 Query 269246 ATAAG 269250 || || Sbjct 390540 ATCAG 390544 >seq104 Length=2005322 Score = 113 bits (124), Expect = 1e-19 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || ||||| || ||||| ||||| || ||||| |||||||||||| Sbjct 1841231 GTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTCTCGGGCTCGTTTGCTGCTATCTTTTGG 1841290 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| ||| | |||||||| || ||| | || ||||| || Sbjct 1841291 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTCATTAGCAGAGAT 1841350 Query 269258 GA 269259 || Sbjct 1841351 GA 1841352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150240522105504