Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq1908 84.2 3e-11 >seq1908 Length=331032 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 164501 TAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACAT 164560 ||||||| || ||| | ||||| ||| | ||| |||||||||| || || ||||||||| Sbjct 123049 TAGGCTGCAAGCATGTGAAAGGCATTCTGTTATATGGACCTCCAGGCTGTGGTAAAACAC 123108 Query 164561 TAATGGCTCGATGCATTGCTCAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATG 164617 | ||||| || |||| |||| | | ||| | || || || | || |||| Sbjct 123109 TTATGGCGAGACAGATTGG-CAAGATGCTGAATGCCAGAGAACCA--AAGGTGGTCAATG 123165 Query 164618 GTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTC 164677 |||| ||| | | || ||||| || || ||||| || || || | | ||| ||||| Sbjct 123166 GTCCAGAAATCCTCAATAAATACGTGGGCGAGTCTGAGGCCAACATCCGCAAGCTGTTTG 123225 Query 164678 AGGAGGCTGAAGAAGAACAAA 164698 || || ||||||||||||| Sbjct 123226 CTGATGCAGAAGAAGAACAAA 123246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595287389980800