Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq404 147 3e-30 seq2441 145 1e-29 >seq404 Length=1135484 Score = 147 bits (162), Expect = 3e-30 Identities = 220/311 (71%), Gaps = 1/311 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | ||| Sbjct 1059718 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1059659 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || ||||||||||| |||||||| | |||| Sbjct 1059658 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCTGGGG 1059599 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | ||||| | || |||| || ||||| || || || || || || | || | || Sbjct 1059598 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCGATTTCTACCATTG 1059539 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || |||||||| || || || ||||| || | || ||| | |||| ||||| Sbjct 1059538 TTTCGCCAAAGATGGCACCTGGTCGTGGTTTTTCTACAAGGAGTCCTGGATACAGCTCCA 1059479 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 1059478 TAGCATCTATGTCTCCATAAAGCTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCTGTAA 1059419 Query 8978 TTATTAATAAA 8988 ||||| || || Sbjct 1059418 TTATTGATGAA 1059408 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || || | || || ||| ||| |||||||| || ||||||| Sbjct 1057707 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1057648 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||| || ||||| || ||||| |||||||| | ||| || Sbjct 1057647 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 1057588 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || ||||||| | ||| | ||| || || | ||||| Sbjct 1057587 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 1057528 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | ||| ||||||||||| || || || ||| Sbjct 1057527 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCTATCATC 1057468 Query 9862 TG 9863 || Sbjct 1057467 TG 1057466 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| || | ||||| || || | |||| ||| Sbjct 1056031 ACCTTTAACACCCATTGGTGTTGGACAGTCACGTCCTACCGGGGGAAGGCTTCTTGTGTA 1055972 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| ||| ||||||| || ||| | ||||| ||||| | || Sbjct 1055971 ATAGGAAAGATTGGAATAAGTTTCCCAGTTTTTGTAATTATAGTCACTATTGTAAGTTGG 1055912 Query 10409 AGGGCTGTCAATCAAATCGGATCT 10432 |||||||||||||||| ||||| Sbjct 1055911 TGGGCTGTCAATCAAATGTGATCT 1055888 >seq2441 Length=309800 Score = 145 bits (160), Expect = 1e-29 Identities = 211/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8678 CGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCA 8737 ||||| || | |||| |||| || |||||| || || || || | | ||| Sbjct 52496 CGGAAGGCCACGTACGGGCACCTCTTCACGTTGAGGCACACCAGCTTCTCCAGGGATGCT 52555 Query 8738 CTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGG 8797 ||||||| ||| |||| || ||||||| ||||| ||||| |||||||| ||||| Sbjct 52556 GTCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGCTTCCAGTACTCCGGG 52615 Query 8798 GAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATG 8857 ||||||||| ||| | | || || || |||||||| ||||| || | ||| | ||| Sbjct 52616 GAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAAGGGAGCTCCGATCTCCACCATG 52675 Query 8858 CTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCC 8917 || || ||||| ||| ||||||| |||| || || | || || || | ||| |||||| Sbjct 52676 CTTTCTCCGAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAAAACTCC 52735 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 | || ||||||||||| || || || || || ||||| | |||| ||||||| Sbjct 52736 AGCGCGTCGATGTCTCCATAGAGCTCCTCCAGCTCTGCAGCCTTCTCCTCCTCTCCTG 52793 Score = 109 bits (120), Expect = 8e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| |||| ||||| || || || ||||| ||||| || || Sbjct 54840 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGGTGC 54899 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || || ||||| | ||||| || | |||||| || | ||||||| || |||||||| Sbjct 54900 TCCCGCTTCAGGATGTCGCAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATG 54959 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||| || |||| || || || |||| ||||| | ||||| || | | | ||| Sbjct 54960 CAGAGCCCCGGCAGGAGCCCGAACACCTCCTGACCCATCGCCAGCTGCTTCTCCTTGGGG 55019 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 || | || || || | |||||| ||| | | || ||||||||||||| |||| Sbjct 55020 ACGGCAGGCGGGTACACCATGTGGACCGGCGCTTCGGTGACCGAGGGGGGGTACA 55074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707829666318720