Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1065 138 1e-27 seq459 98.7 9e-16 >seq1065 Length=1128224 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||| |||| ||| | ||| | |||||| || || || | ||| || || | Sbjct 373614 CCACCTCTCAAGCGCAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAC 373673 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || || | ||||| || || ||||| || |||||| Sbjct 373674 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGA 373733 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||||| ||||| || | | ||||||| | | || || Sbjct 373734 ATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACC 373793 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || |||||||||||||||||||||| Sbjct 373794 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATGC 373842 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| || | ||| | ||| |||||||| || | ||| || || | Sbjct 373842 CCACCTCTCAGGCGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 373901 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || || | ||||| || || ||||| || |||||| Sbjct 373902 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGA 373961 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||||| ||||| || | | ||||||| | | || || Sbjct 373962 ATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACC 374021 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || |||||||||||||||||||||| Sbjct 374022 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATGC 374070 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | ||| | || || ||||| || | ||| || || | Sbjct 373386 CCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 373445 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| |||||||||||| || || | ||||| || || ||||| || |||||| Sbjct 373446 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGA 373505 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | ||||| ||||| || | | ||||||| | | || || Sbjct 373506 ATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACC 373565 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || ||||| || |||||||||||||||||||||| Sbjct 373566 TCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATGC 373614 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| || | ||| | ||| |||||||| || | ||| || || | Sbjct 374070 CCACCTCTCAGGCGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 374129 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || || ||||| || || ||||||| | || ||||| ||||| ||| Sbjct 374130 AGGGTGCGCCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 374189 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| || ||| || ||| | | || || Sbjct 374190 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAACC 374249 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || | |||||||| || ||||| || || |||||||||||||||||| Sbjct 374250 TCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 374297 >seq459 Length=1799516 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | |||| || || || ||||| | ||| || ||| | Sbjct 774498 CCACCCCTCAGGCGCAGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGAC 774439 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| || ||||| || || ||||||| | || ||||| ||||| ||| Sbjct 774438 AGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 774379 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || |||||||| | | |||||| | | ||||| Sbjct 774378 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 774319 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || | || || |||||||||||||| Sbjct 774318 TCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCAT 774272 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||||||||| ||| || ||||| || | ||| || ||| || ||| | Sbjct 774030 CGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 773971 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || ||||| || || | || || | || ||||| || |||||||| || || ||| Sbjct 773970 TCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTG 773911 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | |||||| | | || || || | |||||| Sbjct 773910 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATG 773851 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | || || |||||||||||||| Sbjct 773850 GTCTTACCTGTCAAGGTCTTGACAAAGATCTGCAT 773816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447851381503680