Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq37 107 5e-18 seq315 87.8 5e-12 >seq37 Length=3134438 Score = 107 bits (118), Expect = 5e-18 Identities = 125/167 (75%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 |||||||| || || || | ||||| ||| || |||||||||| |||||||||||| Sbjct 1777859 ACAAATGCCAAGGAGCTCTCTGCAAAGGGTGTGAAGATTTGGGATGCCAATGGATCACGT 1777800 Query 111450 GACTTTCTAGATT--CAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTTT 111507 || || || ||| ||| ||| ||| | || ||||| || ||| | |||||||||| Sbjct 1777799 GAATTCCTGGATAAGCAG--GGTTTTGGCACCAGAGAAGAGGGGGATTTGGGACCAGTTT 1777742 Query 111508 ACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 | || || || ||| | |||||||| ||||| |||||| |||||| Sbjct 1777741 ATGGTTTCCAGTGGAGGCACTTTGGAGCAGAATACAAAGATATGCAC 1777695 >seq315 Length=1270250 Score = 87.8 bits (96), Expect = 5e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| | | || ||||| | || |||||||| ||||||||||| | ||| | || Sbjct 390423 GAACGTGTAGTAGCTTTTGCAGCTGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCTTCA 390482 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || |||||||| || ||| | | | | |||||||| || || ||||| || || | || Sbjct 390483 ATTTTTTGGCTGAAGAAAAGAGGATTAATGCCGGGACTCACTTTTTCTAACGAACTCATC 390542 Query 22609 AGCCGAGATGAGG 22621 || |||||||||| Sbjct 390543 AGTCGAGATGAGG 390555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302042911777616