Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20platyrhynchos_20[refseq_20GCF_5F000355885.1_202013-04-26] 78,488 sequences; 1,105,052,351 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1065 138 1e-27 seq459 116 3e-21 seq998 104 2e-17 >seq1065 Length=1128224 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | || | ||| |||||||| || |||||||| || Sbjct 373385 GCCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 373444 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| || | ||||||||| ||||| Sbjct 373445 CAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGG 373504 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| |||||| ||| | | ||| | ||| || ||| ||| | Sbjct 373505 AATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAAC 373564 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || ||||| || || ||||||||| Sbjct 373565 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 373613 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | ||| |||||||| | || | || ||||| || || |||||||| || Sbjct 373613 GCCACCTCTCAAGCGCAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 373672 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| || | ||||||||| ||||| Sbjct 373673 CAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGG 373732 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| |||||| ||| | | ||| | ||| || ||| ||| | Sbjct 373733 AATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAAC 373792 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || ||||| || || ||||||||| Sbjct 373793 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 373841 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||| || | || | || || ||||| || |||||||| || Sbjct 373841 GCCACCTCTCAGGCGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 373900 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| || | ||||||||| ||||| Sbjct 373901 CAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGG 373960 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || |||||||| |||||| ||| | | ||| | ||| || ||| ||| | Sbjct 373961 AATGCCCTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAAC 374020 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || ||||| || || ||||||||| Sbjct 374021 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCATG 374069 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||| || | || | || || ||||| || |||||||| || Sbjct 374069 GCCACCTCTCAGGCGCAGGACAAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 374128 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| ||| || |||||||||||||| |||| | | ||||||||| || || Sbjct 374129 CAGGGTGCGCCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGGGG 374188 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||| | | ||| | ||||| ||| ||| | Sbjct 374189 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGCTCAAC 374248 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | ||| || || || || || || || || ||||||||| Sbjct 374249 CTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 374297 >seq459 Length=1799516 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | ||| | ||| ||||| ||||| |||||||| ||| | Sbjct 774498 CCACCCCTCAGGCGCAGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGAC 774439 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 774438 AGGGTGCGCCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 774379 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | || || ||| ||||| Sbjct 774378 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACC 774319 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | || || || || |||||||| Sbjct 774318 TCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCAT 774272 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | ||| | || || ||||| || |||||||| ||| || ||||||| Sbjct 774258 CGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 774199 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | | ||||||||| || || || || || ||| Sbjct 774198 TCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 774139 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||| | || | ||| | | Sbjct 774138 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATG 774079 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || || || || ||||||||||||||| Sbjct 774078 GTCTTGCCAGTCAGGGTCTTCACGAAAATCTGCATG 774043 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| || || | || |||||||| || |||||||| ||| || ||||||| Sbjct 774030 CGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 773971 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| ||| | || | | ||||||||| ||||| || || || ||| Sbjct 773970 TCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTG 773911 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | ||| | || || ||| ||| | || | ||| | | Sbjct 773910 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATG 773851 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || | || || || || |||||||| Sbjct 773850 GTCTTACCTGTCAAGGTCTTGACAAAGATCTGCAT 773816 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | ||| | || || ||||| || |||||||| ||| || ||||||| Sbjct 773802 CGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCA 773743 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| ||| | || | | ||||||||| ||||| || || || ||| Sbjct 773742 TCTTCAAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGGTCGGGAGGAATGCCCTCCTTG 773683 Query 131140 TC 131141 || Sbjct 773682 TC 773681 >seq998 Length=117795 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| |||||| ||||||||||| |||| ||| |||||||| || |||| |||||| | | Sbjct 99143 CACAGATTGCTGCATTTGATGGTCCCCAAATTCTGCTGATTGCTCTTCCGGTTGCAAGAG 99202 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 |||||||| |||||||| ||| ||||||||| Sbjct 99203 TCCTTGTACAGCATGTAAGGTGTGCCAGTCTC 99234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471549708241920